Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq394582 95.1 2e-14 seq1799193 89.7 7e-13 >seq394582 Length=1925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || || || | ||| || ||||||| |||| |||| | ||| ||| |||||||| Sbjct 708 ATGTGGTTGAGATAAATGTGTGCATCTCCAAGTGTATGCACAAAATCACCCGGTTTTAAG 767 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 | |||| ||||||||||| ||||||| | ||||||||| ||||||||||| || Sbjct 768 TCTGTTAGGTGTGCAATCATGTAAGTCAGCAGTGAATAACTAGCCACATTAAATGGAACC 827 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG 205540 || | ||||| || | ||||| ||||| | ||||||| Sbjct 828 CCCAGGCCCATGTCCCCCGATCTCTGATAAAGCTGACATG 867 >seq1799193 Length=4297 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| | || || ||||| | || ||||| || || || ||| | ||| ||||| | Sbjct 1876 ATGTAGATTTTCATAAAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCTCG 1935 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||| ||| |||| || ||||| ||||| ||||| || || ||||||||| Sbjct 1936 GATACAAGAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAA 1995 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| | || ||| |||| ||| | | || || || || || Sbjct 1996 CAAAGACTAATTTTTGCTTGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTACAAC 2055 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||| | || ||| | ||| | || || Sbjct 2056 ATTCAAAAGAAGTCCACTCTTCATCTTGTGTT 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 724942140624000