Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1537392 116 3e-21 seq2677557 113 4e-20 seq2031399 100 2e-16 seq2929101 98.7 8e-16 seq1549142 91.5 1e-13 >seq1537392 Length=19804 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118532 CAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAG 118591 |||||| | || |||||||| || |||||||| || || ||| | ||| | | Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 |||||| ||||| |||| | || ||||||||| ||| | ||||| ||||||||| || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 |||| | || | || | |||||| || ||| ||||||| ||| | || ||||| Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||| |||||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2677557 Length=202 Score = 113 bits (124), Expect = 4e-20 Identities = 136/184 (74%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 118555 GAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGAC 118614 |||||||||| ||| | |||| | |||||| ||| |||| || || | || |||| Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65 Query 118615 GCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGG 118674 |||||| ||||| || ||||||||||||||| ||||| ||| || | |||| || Sbjct 66 ACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGG 124 Query 118675 TGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 118734 |||| || ||| ||||||| ||| | || ||||| ||||| || || || || |||| Sbjct 125 TGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCT 184 Query 118735 GCAT 118738 |||| Sbjct 185 GCAT 188 >seq2031399 Length=344 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 249 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 190 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| | || || | |||||||| ||||| Sbjct 189 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 130 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | ||||| Sbjct 129 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 70 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || || || |||||||| ||||||||||| Sbjct 69 CTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 >seq2929101 Length=1797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||||| || ||||||||||| | |||||| |||||| Sbjct 944 CACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTC 1003 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| | | | || ||| ||||||| || || || || |||||||||||| Sbjct 1004 CAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTG 1063 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || | |||| |||||| || || |||||| | ||| | || || Sbjct 1064 GGTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGTCTT 1123 Query 118709 GCCGGTCAGAGTTTTTACAAAAAT 118732 ||| ||||| || || || || || Sbjct 1124 GCCCGTCAGGGTCTTCACCAATAT 1147 >seq1549142 Length=19220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | | |||||||| || ||| ||| || | |||| | ||| || Sbjct 14352 CACCAGGTGCAGGCTGGACTCTTTCTGGGTGTCGTAGTCTAAAAGAGTGTGGCCATCTTC 14411 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || |||| |||| | || || || ||||||||||||| | Sbjct 14412 CAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGGATGCCCTCCTTGTTTTG 14471 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| | ||| || | || | | | || || ||||||||| | ||| | || || Sbjct 14472 GATTTTGTCTTTGACATTCTCAATGATATCACTGAGCTCGACCTCAAGGGTGATGGTCTT 14531 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || ||||| |||||||| Sbjct 14532 GCCTGTTAGGGTCTTCACAAAGATCTGCAT 14561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416745495223060