Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1537392 116 3e-21
seq2677557 113 4e-20
seq2031399 100 2e-16
seq2929101 98.7 8e-16
seq1549142 91.5 1e-13
>seq1537392
Length=19804
Score = 116 bits (128), Expect = 3e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 118532 CAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAG 118591
|||||| | || |||||||| || |||||||| || || ||| | ||| | |
Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007
Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651
|||||| ||||| |||| | || ||||||||| ||| | ||||| ||||||||| ||
Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947
Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711
|||| | || | || | |||||| || ||| ||||||| ||| | || |||||
Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887
Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || ||||| ||||||||
Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860
>seq2677557
Length=202
Score = 113 bits (124), Expect = 4e-20
Identities = 136/184 (74%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 118555 GAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGAC 118614
|||||||||| ||| | |||| | |||||| ||| |||| || || | || ||||
Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65
Query 118615 GCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGG 118674
|||||| ||||| || ||||||||||||||| ||||| ||| || | |||| ||
Sbjct 66 ACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGG 124
Query 118675 TGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 118734
|||| || ||| ||||||| ||| | || ||||| ||||| || || || || ||||
Sbjct 125 TGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCT 184
Query 118735 GCAT 118738
||||
Sbjct 185 GCAT 188
>seq2031399
Length=344
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || ||||| |||||||||||||| ||
Sbjct 249 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 190
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || || || || ||||| | || || | |||||||| |||||
Sbjct 189 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 130
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | || |||| | |||||
Sbjct 129 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 70
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || || || |||||||| |||||||||||
Sbjct 69 CTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22
>seq2929101
Length=1797
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||||| || ||||||||||| | |||||| ||||||
Sbjct 944 CACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTC 1003
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| | | | || ||| ||||||| || || || || ||||||||||||
Sbjct 1004 CAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTG 1063
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||| ||| || | |||| |||||| || || |||||| | ||| | || ||
Sbjct 1064 GGTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGTCTT 1123
Query 118709 GCCGGTCAGAGTTTTTACAAAAAT 118732
||| ||||| || || || || ||
Sbjct 1124 GCCCGTCAGGGTCTTCACCAATAT 1147
>seq1549142
Length=19220
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | | |||||||| || ||| ||| || | |||| | ||| ||
Sbjct 14352 CACCAGGTGCAGGCTGGACTCTTTCTGGGTGTCGTAGTCTAAAAGAGTGTGGCCATCTTC 14411
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || |||| |||| | || || || ||||||||||||| |
Sbjct 14412 CAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGGATGCCCTCCTTGTTTTG 14471
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| | ||| || | || | | | || || ||||||||| | ||| | || ||
Sbjct 14472 GATTTTGTCTTTGACATTCTCAATGATATCACTGAGCTCGACCTCAAGGGTGATGGTCTT 14531
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || ||||| ||||||||
Sbjct 14532 GCCTGTTAGGGTCTTCACAAAGATCTGCAT 14561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 416745495223060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |