Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1521424 104 4e-17 >seq1521424 Length=9149 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| ||||||||||| ||||||||| | || ||||| Sbjct 1240 GCATTTTTTGGAGCCCAGATGAATTCCTTTATCCATGTGATTATGTACTCCTACTATGGG 1181 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||| ||||||||| ||||||||||| || || || | Sbjct 1180 TTAACTGCATTTGGCCC-ATGGATTCA-AAAGTATCTTTGGTGGAAACGATACCTGACCA 1123 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 1122 TGTTGCAGCTGGT 1110 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | || || ||||| ||||| ||||| || || ||| Sbjct 3255 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 3196 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || ||| ||| || || ||||||||||| | ||| |||||||| | Sbjct 3195 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 3136 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| |||| || || || Sbjct 3135 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 3101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 885907669552200