Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1627958 84.2 1e-11 seq2677557 82.4 5e-11 >seq1627958 Length=3316 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||| ||||||||||| |||| | || || | || |||| ||| || || || || Sbjct 284 TCTTTCTAGATGTTGTAGTCAGACACGGTG-CGTCCATCTTCCAGCTGTTTCCCGGCAAA 226 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || |||||| || ||| | || |||||||| |||||| ||| | || Sbjct 225 GATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 166 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | ||||||| ||||| || || || ||||| Sbjct 165 CTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCAC 106 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 105 AAAGATCTGCATC 93 >seq2677557 Length=202 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 34201 TTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAAT 34260 |||| | |||||||||||||| || || | || |||| | | |||||||| || || Sbjct 1 TTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATAT 60 Query 34261 GAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGG 34319 || | |||||||||| ||| | || ||||||||| || ||| ||||| | | Sbjct 61 CAGACACTGCTGGTCG-GGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACGTTCT 118 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | || | | || || || | |||||||| ||||| || || || ||||| | Sbjct 119 CGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGA 178 Query 34380 AGATCTGCATC 34390 ||||||||||| Sbjct 179 AGATCTGCATC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310348930440800