Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1557410 192 5e-44 seq1615235 98.7 9e-16 seq1919022 93.3 4e-14 >seq1557410 Length=8730 Score = 192 bits (212), Expect = 5e-44 Identities = 591/905 (65%), Gaps = 22/905 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| ||| | ||| ||| | |||||||| ||||| Sbjct 6509 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGACATTTGCCTACTCTCTTCTCAAA 6568 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || |||||||| | ||||||||| |||||||| ||||| ||||||| | | Sbjct 6569 GAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCG 6628 Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092 | || | | |||| ||||| | | ||| || |||||||| || | ||||| Sbjct 6629 GAAAACCTTGCTGAAACCCAGTTCCAGCCTAAGTCTGTCTGCCACAAACTCAACGTACTG 6688 Query 16093 TTTCATTAA-ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | |||||| || | ||||| | | || || | | || || || | ||| | Sbjct 6689 CTCCATTAACATGCAATTTCATCGCAAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAACT 6748 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGG 16210 | |||||| |||| || | | ||||| ||| ||||| | || | ||| || | Sbjct 6749 CCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACT-CTCTGCTCTAATGGTTTG 6807 Query 16211 TTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTT 16270 | || | |||||| ||||| | || ||||| |||||| | || || || || || || Sbjct 6808 TGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTA 6867 Query 16271 ATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330 | | || | |||||||| || || ||||| ||||||| ||| || | ||| ||||| Sbjct 6868 GTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATC 6927 Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 | ||||| ||||||||||||| || ||||| ||||||||||| || || | | || Sbjct 6928 GATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCT 6987 Query 16391 CCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448 ||||| || || ||| | | | ||||| | ||||| || || | | Sbjct 6988 CCGTAGGTAGCCTCTTTGTCC--CCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGA 7045 Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATAT 16508 |||| ||| | || || ||||| || | | | | ||||||| |||| ||| | Sbjct 7046 CACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGT 7105 Query 16509 AAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAAC 16568 |||| || || | | ||||||||| | ||||| || || | | || || || || | Sbjct 7106 AAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGC 7165 Query 16569 CATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTT 16628 |||| || || ||||| || ||||| | ||| | | ||||| | Sbjct 7166 CATAGAAACAGTAGGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACCAAGTTGT 7218 Query 16629 CGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt-ttttt 16687 | || ||| | | || || |||||||| || || || | | || |||| | | | Sbjct 7219 CATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCTCT 7278 Query 16688 tC---GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 || | |||| | || ||||| ||| || || || | ||| ||||| || Sbjct 7279 TCTCAGGCTTCTG--GGCTT--CCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCC 7334 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804 | |||||||| |||| |||| || ||||||||| ||| || || | ||| ||||| Sbjct 7335 GCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATA 7394 Query 16805 GGAAA 16809 || || Sbjct 7395 GGGAA 7399 >seq1615235 Length=3244 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992 Query 16379 AC 16380 || Sbjct 2991 AC 2990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || | Sbjct 1383 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 1324 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | |||||| | || || ||||| Sbjct 1323 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 1269 >seq1919022 Length=3229 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | ||| ||||||||| | | | | |||||| | | Sbjct 3204 TTTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCCGTCATAACCGCAAAAC 3145 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 || || || ||||| || ||||||||||| |||||||||| ||| ||||| |||| Sbjct 3144 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTT 3085 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 3084 CCATAAAATCAAAGGGATTTTCTG 3061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443830533273000