Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 192 5e-44
seq1615235 98.7 9e-16
seq1919022 93.3 4e-14
>seq1557410
Length=8730
Score = 192 bits (212), Expect = 5e-44
Identities = 591/905 (65%), Gaps = 22/905 (2%)
Strand=Plus/Plus
Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972
||| ||| || | ||||||| ||| ||| | ||| ||| | |||||||| |||||
Sbjct 6509 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGACATTTGCCTACTCTCTTCTCAAA 6568
Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032
||| || || |||||||| | ||||||||| |||||||| ||||| ||||||| | |
Sbjct 6569 GAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCG 6628
Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092
| || | | |||| ||||| | | ||| || |||||||| || | |||||
Sbjct 6629 GAAAACCTTGCTGAAACCCAGTTCCAGCCTAAGTCTGTCTGCCACAAACTCAACGTACTG 6688
Query 16093 TTTCATTAA-ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151
| |||||| || | ||||| | | || || | | || || || | ||| |
Sbjct 6689 CTCCATTAACATGCAATTTCATCGCAAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAACT 6748
Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGG 16210
| |||||| |||| || | | ||||| ||| ||||| | || | ||| || |
Sbjct 6749 CCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACT-CTCTGCTCTAATGGTTTG 6807
Query 16211 TTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTT 16270
| || | |||||| ||||| | || ||||| |||||| | || || || || || ||
Sbjct 6808 TGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTA 6867
Query 16271 ATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330
| | || | |||||||| || || ||||| ||||||| ||| || | ||| |||||
Sbjct 6868 GTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATC 6927
Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390
| ||||| ||||||||||||| || ||||| ||||||||||| || || | | ||
Sbjct 6928 GATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCT 6987
Query 16391 CCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448
||||| || || ||| | | | ||||| | ||||| || || | |
Sbjct 6988 CCGTAGGTAGCCTCTTTGTCC--CCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGA 7045
Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATAT 16508
|||| ||| | || || ||||| || | | | | ||||||| |||| ||| |
Sbjct 7046 CACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGT 7105
Query 16509 AAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAAC 16568
|||| || || | | ||||||||| | ||||| || || | | || || || || |
Sbjct 7106 AAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGC 7165
Query 16569 CATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTT 16628
|||| || || ||||| || ||||| | ||| | | ||||| |
Sbjct 7166 CATAGAAACAGTAGGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACCAAGTTGT 7218
Query 16629 CGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt-ttttt 16687
| || ||| | | || || |||||||| || || || | | || |||| | | |
Sbjct 7219 CATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCTCT 7278
Query 16688 tC---GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744
|| | |||| | || ||||| ||| || || || | ||| ||||| ||
Sbjct 7279 TCTCAGGCTTCTG--GGCTT--CCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCC 7334
Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804
| |||||||| |||| |||| || ||||||||| ||| || || | ||| |||||
Sbjct 7335 GCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATA 7394
Query 16805 GGAAA 16809
|| ||
Sbjct 7395 GGGAA 7399
>seq1615235
Length=3244
Score = 98.7 bits (108), Expect = 9e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992
Query 16379 AC 16380
||
Sbjct 2991 AC 2990
Score = 82.4 bits (90), Expect = 7e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || |
Sbjct 1383 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 1324
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
| ||||| || || || || ||||| || || | |||||| | || || |||||
Sbjct 1323 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 1269
>seq1919022
Length=3229
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | ||| ||||||||| | | | | |||||| | |
Sbjct 3204 TTTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCCGTCATAACCGCAAAAC 3145
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|| || || ||||| || ||||||||||| |||||||||| ||| ||||| ||||
Sbjct 3144 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTT 3085
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 3084 CCATAAAATCAAAGGGATTTTCTG 3061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443830533273000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |