Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq394582 304 1e-77 seq1611918 187 2e-42 seq1921304 156 3e-33 >seq394582 Length=1925 Score = 304 bits (336), Expect = 1e-77 Identities = 494/706 (70%), Gaps = 4/706 (1%) Strand=Plus/Minus Query 20042 AATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 |||| || || || || || || | || |||||| || ||| | || || | ||| Sbjct 1284 AATTCCCTTTGTTCACAACTAAGAGAGTCTTTTGGCGGGGTGTTCTGGAGGAACTTCTAT 1225 Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGA 20161 ||||| || || |||||||| || | |||||| | ||| || || || || ||| Sbjct 1224 GGTTTGTTCGGGGGTCAACAAACTCCAAAGAGCTTTCATCAAAGGGGGTAAACATCTGGG 1165 Query 20162 GCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGG 20220 ||| |||| |||| | |||||| ||| | || ||| || | | ||||| Sbjct 1164 ACGCCAATGGCTCTAGAGACTTTTTAGACAAACACGG-TTTCACTCATAGAACCGAGGGT 1106 Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 || |||| ||| | ||||| ||||| ||||| || |||||||| || || |||||| Sbjct 1105 GACCTGGGACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGAGACATG 1046 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 ||| || |||||| ||||||||| | || ||| |||||||||| ||| | || | | Sbjct 1045 AACTCAGATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACACGATCAGA 986 Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400 | ||| || | ||||| ||||| || || || |||||||| | || || | | | Sbjct 985 AAGAATCCCAGTGACAGGAGAATCATATTGTGTGCCTGGAATCCCAAGGACCTTTCCCTG 926 Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| ||||||| ||||| | ||| ||||||||| || |||||| || ||||| Sbjct 925 ATGGCCCTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGAGTTGTCA 866 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 ||||| | ||||| |||| | || ||||| ||||| ||||| || ||| | || ||| Sbjct 865 TGTCAGCTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGTGGCTAGT 806 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580 ||| | ||||| || || ||||||||||| | ||||| |||||| ||||||| || || Sbjct 805 TATTCACTGCTGACTTACATGATTGCACACCTAACAGACTTAAAACCGGGTGATTTTGTG 746 Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTA 20640 || || | ||||| || || ||||| || || || ||||| ||| ||||| | |||||| Sbjct 745 CATACACTTGGAGATGCACACATTTATCTCAACCACATAGAGCCTATAAAAATTCAGTTA 686 Query 20641 -ACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAA 20699 | | ||| |||| || ||||| || || |||| | | |||| |||| | Sbjct 685 CAGAGGAC-CCCAAGACCCTTCCCCACACTAACCATTCTGAGGAAAGTTAGCTGTATTGA 627 Query 20700 CGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745 || |||||| || ||||| ||||| ||||||||||| ||| Sbjct 626 TGACTTTAAAAGGGAGGATTTCAGTTTAGAGGGTTATAATCCACAT 581 >seq1611918 Length=7152 Score = 187 bits (206), Expect = 2e-42 Identities = 487/742 (66%), Gaps = 18/742 (2%) Strand=Plus/Plus Query 20033 TGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092 |||| |||||||||| | | || || ||| | || || ||||| || ||| | || | Sbjct 3101 TGAGCGATGAATTTCCTCTGCTGACAACCAAATGTGTGTTCTGGAAGGGTGTTTTGGAGG 3160 Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTA 20152 |||| | |||| | | || ||||| |||||| ||| || || || ||||| | Sbjct 3161 AGTTGCTGTGGTCTGTCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGA 3220 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTC 20212 | || ||| || | || || | ||| | | || ||||| || | | Sbjct 3221 AAATCTGGGATGCCAACGGGTCCCGAGACTTTCTGGATGGCCTGGGATTCTCCACCAGAG 3280 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 ||| ||||| ||||| || || | || || || ||||| |||||||| || ||||| Sbjct 3281 GAGAAGGGGACTTGGGCCCAGTTTTTGACTTCCAGTGGAGGCATTTTGGGGCAGAATACA 3340 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || ||| | || |||||| || |||||||| || ||| ||||||| || ||| || Sbjct 3341 AAGATATGGATTCAGATTATTCAGGTCAAGGAGTTGACCAACTACAAAAAGTGATTGATG 3400 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 || ||||| ||| | ||||||||||||| || | || || ||||| | | |||| Sbjct 3401 CCATCAAAACCAACTCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAACAGATC 3460 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | ||||| ||||| |||| ||| || ||||| || || || | || || Sbjct 3461 TTCCTCTGATGGCACTGCCTTCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACGGTG 3520 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 | |||| || || |||| || || || | || ||||| ||||| | || ||||| | Sbjct 3521 AGCTGTCCTGCCAGCTGTACCAGCG-TCAGGAGACATGGGCCTGGGCATGCCGTTCAACA 3579 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 | | || || || ||||| |||| | || | | |||| | |||| Sbjct 3580 TCACCAGCTACGCCCTGCT--------------CACA--TCACTGGTCTAAAGCCAGGTG 3623 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632 |||| || || || | ||||| || ||||||||| ||||| || || || | || Sbjct 3624 ACTTTGTACATACTTTGGGAGATGCACATATTTACTAGAATCACATTGAGCCACTGAAGG 3683 Query 20633 TACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAG 20692 | ||| | | ||| |||||| || |||||| | || || || || ||| | Sbjct 3684 TTCAGCTTA-GCGAGAACCAAGACCATTCCCGAAGCTCAAAATCCTTCAAAGAGTTGAGA 3742 Query 20693 ATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAA 20752 ||| | ||||| |||||||| || ||| | |||| || |||| | ||| | | Sbjct 3743 CAATTGATGATTTCAAAGCTGAAGACTTTAAAATTGAAGCTTGTAATGCACATCCAACTA 3802 Query 20753 TTCCAATGGAAATGTCTGTTTA 20774 || |||||||||| ||||||| Sbjct 3803 TTAAAATGGAAATGGCTGTTTA 3824 >seq1921304 Length=364 Score = 156 bits (172), Expect = 3e-33 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343 ||| |||||| || |||||||| || ||| | ||||| || ||| || || ||||| Sbjct 78 ACAGATTATTCGGGTCAAGGAGTTGACCAACTGCAAAAAGTGATTGATACCATCAAAACC 137 Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403 ||||| ||||||||||||| || | || || ||||| | |||||| | ||||| ||| Sbjct 138 AACCCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGATCTTCCTTTGATG 197 Query 20404 GCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGT 20463 || ||||||| |||||| || ||||| || ||||| | ||| ||| |||| || Sbjct 198 GCGCTGCCTCCGTGTCATGCGCCCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGC 257 Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523 || |||| || | || | || ||||| ||| | || || ||||| || || || || Sbjct 258 CAGCTGTACCAGCTGTCGGGAGACATGGGCCTGAGCGTGCCGTTCAACATCGCCAGCTAG 317 Query 20524 GCGCTGCTTACGTATATGATTGCACA 20549 || ||||| ||||| ||||| ||||| Sbjct 318 GCCCTGCTCACGTACATGATCGCACA 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383463523453225