Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq394582 304 1e-77
seq1611918 187 2e-42
seq1921304 156 3e-33
>seq394582
Length=1925
Score = 304 bits (336), Expect = 1e-77
Identities = 494/706 (70%), Gaps = 4/706 (1%)
Strand=Plus/Minus
Query 20042 AATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101
|||| || || || || || || | || |||||| || ||| | || || | |||
Sbjct 1284 AATTCCCTTTGTTCACAACTAAGAGAGTCTTTTGGCGGGGTGTTCTGGAGGAACTTCTAT 1225
Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGA 20161
||||| || || |||||||| || | |||||| | ||| || || || || |||
Sbjct 1224 GGTTTGTTCGGGGGTCAACAAACTCCAAAGAGCTTTCATCAAAGGGGGTAAACATCTGGG 1165
Query 20162 GCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGG 20220
||| |||| |||| | |||||| ||| | || ||| || | | |||||
Sbjct 1164 ACGCCAATGGCTCTAGAGACTTTTTAGACAAACACGG-TTTCACTCATAGAACCGAGGGT 1106
Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280
|| |||| ||| | ||||| ||||| ||||| || |||||||| || || ||||||
Sbjct 1105 GACCTGGGACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGAGACATG 1046
Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340
||| || |||||| ||||||||| | || ||| |||||||||| ||| | || | |
Sbjct 1045 AACTCAGATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACACGATCAGA 986
Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400
| ||| || | ||||| ||||| || || || |||||||| | || || | | |
Sbjct 985 AAGAATCCCAGTGACAGGAGAATCATATTGTGTGCCTGGAATCCCAAGGACCTTTCCCTG 926
Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460
||||| ||||||| ||||| | ||| ||||||||| || |||||| || |||||
Sbjct 925 ATGGCCCTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGAGTTGTCA 866
Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520
||||| | ||||| |||| | || ||||| ||||| ||||| || ||| | || |||
Sbjct 865 TGTCAGCTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGTGGCTAGT 806
Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580
||| | ||||| || || ||||||||||| | ||||| |||||| ||||||| || ||
Sbjct 805 TATTCACTGCTGACTTACATGATTGCACACCTAACAGACTTAAAACCGGGTGATTTTGTG 746
Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTA 20640
|| || | ||||| || || ||||| || || || ||||| ||| ||||| | ||||||
Sbjct 745 CATACACTTGGAGATGCACACATTTATCTCAACCACATAGAGCCTATAAAAATTCAGTTA 686
Query 20641 -ACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAA 20699
| | ||| |||| || ||||| || || |||| | | |||| |||| |
Sbjct 685 CAGAGGAC-CCCAAGACCCTTCCCCACACTAACCATTCTGAGGAAAGTTAGCTGTATTGA 627
Query 20700 CGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT 20745
|| |||||| || ||||| ||||| ||||||||||| |||
Sbjct 626 TGACTTTAAAAGGGAGGATTTCAGTTTAGAGGGTTATAATCCACAT 581
>seq1611918
Length=7152
Score = 187 bits (206), Expect = 2e-42
Identities = 487/742 (66%), Gaps = 18/742 (2%)
Strand=Plus/Plus
Query 20033 TGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092
|||| |||||||||| | | || || ||| | || || ||||| || ||| | || |
Sbjct 3101 TGAGCGATGAATTTCCTCTGCTGACAACCAAATGTGTGTTCTGGAAGGGTGTTTTGGAGG 3160
Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTA 20152
|||| | |||| | | || ||||| |||||| ||| || || || ||||| |
Sbjct 3161 AGTTGCTGTGGTCTGTCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGA 3220
Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTC 20212
| || ||| || | || || | ||| | | || ||||| || | |
Sbjct 3221 AAATCTGGGATGCCAACGGGTCCCGAGACTTTCTGGATGGCCTGGGATTCTCCACCAGAG 3280
Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272
||| ||||| ||||| || || | || || || ||||| |||||||| || |||||
Sbjct 3281 GAGAAGGGGACTTGGGCCCAGTTTTTGACTTCCAGTGGAGGCATTTTGGGGCAGAATACA 3340
Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332
|| ||| | || |||||| || |||||||| || ||| ||||||| || ||| ||
Sbjct 3341 AAGATATGGATTCAGATTATTCAGGTCAAGGAGTTGACCAACTACAAAAAGTGATTGATG 3400
Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392
|| ||||| ||| | ||||||||||||| || | || || ||||| | | ||||
Sbjct 3401 CCATCAAAACCAACTCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAACAGATC 3460
Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452
| ||| | ||||| ||||| |||| ||| || ||||| || || || | || ||
Sbjct 3461 TTCCTCTGATGGCACTGCCTTCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACGGTG 3520
Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512
| |||| || || |||| || || || | || ||||| ||||| | || ||||| |
Sbjct 3521 AGCTGTCCTGCCAGCTGTACCAGCG-TCAGGAGACATGGGCCTGGGCATGCCGTTCAACA 3579
Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572
| | || || || ||||| |||| | || | | |||| | ||||
Sbjct 3580 TCACCAGCTACGCCCTGCT--------------CACA--TCACTGGTCTAAAGCCAGGTG 3623
Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632
|||| || || || | ||||| || ||||||||| ||||| || || || | ||
Sbjct 3624 ACTTTGTACATACTTTGGGAGATGCACATATTTACTAGAATCACATTGAGCCACTGAAGG 3683
Query 20633 TACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAG 20692
| ||| | | ||| |||||| || |||||| | || || || || ||| |
Sbjct 3684 TTCAGCTTA-GCGAGAACCAAGACCATTCCCGAAGCTCAAAATCCTTCAAAGAGTTGAGA 3742
Query 20693 ATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAA 20752
||| | ||||| |||||||| || ||| | |||| || |||| | ||| | |
Sbjct 3743 CAATTGATGATTTCAAAGCTGAAGACTTTAAAATTGAAGCTTGTAATGCACATCCAACTA 3802
Query 20753 TTCCAATGGAAATGTCTGTTTA 20774
|| |||||||||| |||||||
Sbjct 3803 TTAAAATGGAAATGGCTGTTTA 3824
>seq1921304
Length=364
Score = 156 bits (172), Expect = 3e-33
Identities = 194/266 (73%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343
||| |||||| || |||||||| || ||| | ||||| || ||| || || |||||
Sbjct 78 ACAGATTATTCGGGTCAAGGAGTTGACCAACTGCAAAAAGTGATTGATACCATCAAAACC 137
Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403
||||| ||||||||||||| || | || || ||||| | |||||| | ||||| |||
Sbjct 138 AACCCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAAGATCTTCCTTTGATG 197
Query 20404 GCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGT 20463
|| ||||||| |||||| || ||||| || ||||| | ||| ||| |||| ||
Sbjct 198 GCGCTGCCTCCGTGTCATGCGCCCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGC 257
Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523
|| |||| || | || | || ||||| ||| | || || ||||| || || || ||
Sbjct 258 CAGCTGTACCAGCTGTCGGGAGACATGGGCCTGAGCGTGCCGTTCAACATCGCCAGCTAG 317
Query 20524 GCGCTGCTTACGTATATGATTGCACA 20549
|| ||||| ||||| ||||| |||||
Sbjct 318 GCCCTGCTCACGTACATGATCGCACA 343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383463523453225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |