Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1627958 107 1e-18 seq1537392 95.1 9e-15 seq2677557 93.3 3e-14 >seq1627958 Length=3316 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| ||| ||| |||| ||||||||||| || ||| | || Sbjct 305 AAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATCT 246 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| ||||| || ||||||| ||| || || || || | || |||||||| Sbjct 245 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCT 186 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| | ||| || || | ||| || | | Sbjct 185 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCC 126 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||| |||||||||||||| ||||| Sbjct 125 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq1537392 Length=19804 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 ||||||||| ||| ||| ||||| ||||||||||| ||| | | | || | || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 ||||| || || || ||||| | ||| || || ||| | | || |||||||| || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 |||| | | || | | | | |||| ||| ||||| | ||| || |||||||| Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||||||||||||| ||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2677557 Length=202 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||| |||||||||||||| || | | | || ||||| |||| || || |||||| Sbjct 2 TTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATC 61 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | | ||| |||||||| || | ||||||||||| ||||| || || | | Sbjct 62 AGACACTGCTGGTCGGG-GGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCG 120 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| | ||||||||| | ||| || |||||||| ||||| |||||||| ||| Sbjct 121 ATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAG 180 Query 45329 ATTTGCAT 45336 || ||||| Sbjct 181 ATCTGCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379516534282405