Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1557410 188 7e-43 seq1615235 123 2e-23 seq1769580 104 2e-17 >seq1557410 Length=8730 Score = 188 bits (208), Expect = 7e-43 Identities = 614/939 (65%), Gaps = 26/939 (3%) Strand=Plus/Plus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13917 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 6486 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 6544 Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 | ||| | ||||| || ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 6545 ACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCAT 6604 Query 13978 AAAATCAAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 ||| |||||||||||| | | ||| ||| | | |||| ||||| | | || Sbjct 6605 AAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGA-AACCCAGTTCCAGCCTAAGTC 6663 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATT-CATACCTATTAGTTTT 14095 | || || | ||||||| || || |||||| ||||| ||| | | | || Sbjct 6664 TGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAAGTGCTTC 6723 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA-T 14154 || | | | || | ||| || | |||||| ||||| | | | || || | Sbjct 6724 ACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCT 6783 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 || | | | || | || | | || ||||| || || | || ||||| || Sbjct 6784 TTTACTCTCTGCTCTA-ATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 6842 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 |||| | | ||||||||||| ||| ||||||| | |||||||| | || ||||||| Sbjct 6843 ACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAG 6902 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 ||||| ||| |||| ||| ||||| | || || | || |||||||| || || || || Sbjct 6903 TCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCAC 6962 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 ||| ||||| |||| | ||||||| | | || | ||||| | ||||| Sbjct 6963 TGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAA 7022 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 | ||| || | || | | | | || ||| |||||||| ||||| || | | ||| Sbjct 7023 GGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 7082 Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 | | ||||||| | | |||||| || ||||||| | |||||||| | ||| || || Sbjct 7083 CCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCAT 7142 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574 ||||| | || || || || ||||| ||||| |||||||| || ||| Sbjct 7143 GTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTGA-------ACTTCTTG 7195 Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC-- 14632 | ||| | |||| || ||||| ||| | | ||||| |||||||| || ||| Sbjct 7196 GCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAG 7255 Query 14633 AATATGTTTTTAATAAAGTATTGCTCTTCA--TTGCTGAGTTTTTTCCAATCGGCTAAA- 14689 || | | | || || | | || ||| | ||| | || ||| | |||||| Sbjct 7256 AACACGAGAT--ATGAAATGTCTCTTCTCAGGCTTCTGGG--CTTCCCAGT--GCTAAAT 7309 Query 14690 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||| |||||||| || || || | |||||||| || ||||||| |||||||| Sbjct 7310 GTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 7369 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 | ||| || || | ||| ||||| || | ||||| Sbjct 7370 TCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 2993 CTACAACACGTTCTCC 2978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 1367 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1308 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 1307 GAAGCCATAGAAACAGCGAGCTTCTG 1282 >seq1769580 Length=2278 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1470 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1412 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1411 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1352 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 1351 CATAAAGTCAAATGGATTT 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462863028137400