Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 188 7e-43
seq1615235 123 2e-23
seq1769580 104 2e-17
>seq1557410
Length=8730
Score = 188 bits (208), Expect = 7e-43
Identities = 614/939 (65%), Gaps = 26/939 (3%)
Strand=Plus/Plus
Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13917
|| ||| |||| || | |||| ||| || | || | | || || || ||||| | ||
Sbjct 6486 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 6544
Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977
| ||| | ||||| || ||||||||||| || || ||||||||||| ||||| |||||
Sbjct 6545 ACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCAT 6604
Query 13978 AAAATCAAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036
||| |||||||||||| | | ||| ||| | | |||| ||||| | | ||
Sbjct 6605 AAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGA-AACCCAGTTCCAGCCTAAGTC 6663
Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATT-CATACCTATTAGTTTT 14095
| || || | ||||||| || || |||||| ||||| ||| | | | ||
Sbjct 6664 TGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAAGTGCTTC 6723
Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA-T 14154
|| | | | || | ||| || | |||||| ||||| | | | || || |
Sbjct 6724 ACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCT 6783
Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214
|| | | | || | || | | || ||||| || || | || ||||| ||
Sbjct 6784 TTTACTCTCTGCTCTA-ATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 6842
Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274
|||| | | ||||||||||| ||| ||||||| | |||||||| | || |||||||
Sbjct 6843 ACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAG 6902
Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334
||||| ||| |||| ||| ||||| | || || | || |||||||| || || || ||
Sbjct 6903 TCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCAC 6962
Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394
||| ||||| |||| | ||||||| | | || | ||||| | |||||
Sbjct 6963 TGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAA 7022
Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454
| ||| || | || | | | | || ||| |||||||| ||||| || | | |||
Sbjct 7023 GGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 7082
Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514
| | ||||||| | | |||||| || ||||||| | |||||||| | ||| || ||
Sbjct 7083 CCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCAT 7142
Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574
||||| | || || || || ||||| ||||| |||||||| || |||
Sbjct 7143 GTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTGA-------ACTTCTTG 7195
Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC-- 14632
| ||| | |||| || ||||| ||| | | ||||| |||||||| || |||
Sbjct 7196 GCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAG 7255
Query 14633 AATATGTTTTTAATAAAGTATTGCTCTTCA--TTGCTGAGTTTTTTCCAATCGGCTAAA- 14689
|| | | | || || | | || ||| | ||| | || ||| | ||||||
Sbjct 7256 AACACGAGAT--ATGAAATGTCTCTTCTCAGGCTTCTGGG--CTTCCCAGT--GCTAAAT 7309
Query 14690 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748
||||| |||||||| || || || | |||||||| || ||||||| ||||||||
Sbjct 7310 GTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 7369
Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
| ||| || || | ||| ||||| || | |||||
Sbjct 7370 TCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || || |||||||| || || || ||||||||||| |
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 2993 CTACAACACGTTCTCC 2978
Score = 93.3 bits (102), Expect = 4e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 1367 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1308
Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | ||||||||
Sbjct 1307 GAAGCCATAGAAACAGCGAGCTTCTG 1282
>seq1769580
Length=2278
Score = 104 bits (114), Expect = 2e-17
Identities = 108/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1470 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1412
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
|||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1411 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1352
Query 13975 CATAAAATCAAATGGATTT 13993
|||||| ||||||||||||
Sbjct 1351 CATAAAGTCAAATGGATTT 1333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462863028137400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |