Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1627958 102 6e-17 seq1537392 86.0 5e-12 seq2031399 84.2 2e-11 >seq1627958 Length=3316 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| | ||||||||||| | || || | ||||||| Sbjct 302 ACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATCTTCC 243 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||| || ||| |||| | || || ||||| ||| | ||||||||| || Sbjct 242 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGG 183 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | | |||||| | ||| ||||||| ||||||| ||||| ||||||| ||| Sbjct 182 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTG 123 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || ||||| || ||||| Sbjct 122 CCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq1537392 Length=19804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 18119 CATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAA 18178 || ||| || || || ||||| || ||||||||||| | || || | | ||||| || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 18179 TTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT 18238 ||||| || ||| |||| | || || ||||| | | ||||||||| || || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 18239 TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCC 18298 | || | |||| | ||| |||||| |||||| || | ||||||| | ||||| Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 18299 GGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || ||||| || ||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2031399 Length=344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 263 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 204 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| | || |||||| Sbjct 203 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTT 144 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 143 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTA 84 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| ||| || | ||||| | || || || | |||||||| ||||| ||| Sbjct 83 TCCGAGGGTTCGACCTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGC 24 Query 18324 ATTTT 18328 || || Sbjct 23 ATCTT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 364404853002225