Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1725941 107 2e-18 seq2031399 100 2e-16 seq2677557 96.9 3e-15 seq1852988 91.5 1e-13 seq1731777 91.5 1e-13 >seq1725941 Length=6718 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || || || ||||| || || || || Sbjct 1639 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 1698 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 1699 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTT 1758 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 1759 CCTGTCTCTGTCTGAGACTCAATGATGGC 1787 >seq2031399 Length=344 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| || || ||||| |||| || ||||| Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 197 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 198 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 239 >seq2677557 Length=202 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 188 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 129 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || ||||||||| Sbjct 128 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCC-CCCGACCAG 70 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| |||| ||||| || ||||||| | |||| || Sbjct 69 CAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGA 35 >seq1852988 Length=3013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| || || ||||| |||| |||||||| Sbjct 1999 AAGATGCATATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAACCC 2058 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || ||| |||||||| | || || || Sbjct 2059 TCAGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2118 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||| | | ||| ||| | || || Sbjct 2119 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAA-AATGGATGTACTTT----GACTA 2173 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| | || ||||||||||| || | ||||| Sbjct 2174 CAACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 2215 >seq1731777 Length=2471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| ||||| ||||| || || | || || || ||||| |||| ||||| Sbjct 934 ATCAAA-ATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGA 876 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||| || |||| | ||| || ||| | || | | ||||||| | | || Sbjct 875 ACCCTCGGACACAATATAAAATGTAAAAGCCAAGATCCAGTATGAGGAAGGAATTCTTCC 816 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCG 31364 || ||||| | || || || |||||||| || |||||||| ||| ||| || | Sbjct 815 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGG-ATGTACTTTGTCTG 757 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | || ||||||||||| || || ||||||||||| || | ||||| Sbjct 756 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428214511263815