Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1725941 107 2e-18
seq2031399 100 2e-16
seq2677557 96.9 3e-15
seq1852988 91.5 1e-13
seq1731777 91.5 1e-13
>seq1725941
Length=6718
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || || ||||| ||||| || || || ||||| || || || ||
Sbjct 1639 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 1698
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||
Sbjct 1699 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTT 1758
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 1759 CCTGTCTCTGTCTGAGACTCAATGATGGC 1787
>seq2031399
Length=344
Score = 100 bits (110), Expect = 2e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||||| || || ||||| || || ||||| |||| || |||||
Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || ||
Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | | | ||| || || ||
Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 197
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 198 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 239
>seq2677557
Length=202
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/155 (74%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || ||
Sbjct 188 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 129
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| |||||||| ||| | || |||||||||
Sbjct 128 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCC-CCCGACCAG 70
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||| |||| ||||| || ||||||| | |||| ||
Sbjct 69 CAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGA 35
>seq1852988
Length=3013
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||||| || || ||||| || || ||||| |||| ||||||||
Sbjct 1999 AAGATGCATATTTTCGTAAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAACCC 2058
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||| || || | || ||| |||||||| | || || ||
Sbjct 2059 TCAGATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2118
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||| | | ||| ||| | || ||
Sbjct 2119 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAA-AATGGATGTACTTT----GACTA 2173
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| | || ||||||||||| || | |||||
Sbjct 2174 CAACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 2215
>seq1731777
Length=2471
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/226 (70%), Gaps = 3/226 (1%)
Strand=Plus/Minus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||||| ||||| ||||| ||||| || || | || || || ||||| |||| |||||
Sbjct 934 ATCAAA-ATGCAGATTTTTGTAAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGA 876
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
||| || |||| | ||| || ||| | || | | ||||||| | | ||
Sbjct 875 ACCCTCGGACACAATATAAAATGTAAAAGCCAAGATCCAGTATGAGGAAGGAATTCTTCC 816
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCG 31364
|| ||||| | || || || |||||||| || |||||||| ||| ||| || |
Sbjct 815 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGACGG-ATGTACTTTGTCTG 757
Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
| || ||||||||||| || || ||||||||||| || | |||||
Sbjct 756 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428214511263815
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |