Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq394582 178 2e-39 seq1615235 93.3 8e-14 >seq394582 Length=1925 Score = 178 bits (196), Expect = 2e-39 Identities = 426/636 (67%), Gaps = 9/636 (1%) Strand=Plus/Minus Query 35168 GGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCA 35227 || ||||| || | ||||| | || | |||| ||| || ||| |||| ||||| Sbjct 1333 GGCACTCTCTCTGTCTTTGGCTCACAGAGCAGGTACTCCCTAAGAG--GACA--ATTCCC 1278 Query 35228 GTTCT-CACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCAT 35286 || | ||| || |||| | | || ||| | || ||| |||| ||||| ||||| | Sbjct 1277 TTTGTTCACAACTAAGAGAGTCTTTTGGCGGGGTGTTCTGGAGGAACTTCTATGGTTTGT 1218 Query 35287 CAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAA 35346 |||| ||| || ||||||| | | ||| | || |||||||| |||| || Sbjct 1217 TCGGGGGTCAACAAACTCCAAAGAGCTTTCATCAAAGGGGGTAAACATCTGGGACGCCAA 1158 Query 35347 TGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACG-ATAGAGCAGAGGGAGATTTGG 35405 ||| || | || ||||| |||| | | |||| || ||||| | ||||| || ||| Sbjct 1157 TGGCTCTAGAGACTTTTTAGACAA-ACACGGTTTCACTCATAGAACCGAGGGTGACCTGG 1099 Query 35406 GACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT-GATACCTGTTCTTCC 35464 |||| | || || || || ||| | || ||||| || || || || || || || | Sbjct 1098 GACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGAGACATGAACT-CA 1040 Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAAT 35524 |||||| ||||| | || ||||| ||| | ||| | | | || | ||| | ||| Sbjct 1039 GATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACACGATCAGAAAGAAT 980 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || ||| || || || || || || |||||||| | ||| ||| ||| ||||| Sbjct 979 CCCAGTGACAGGAGAATCATATTGTGTGCCTGGAATCCCAAGGACCTTTCCCTGATGGCC 920 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAG 35644 || ||||| || |||| || ||||||||||||||||||||||| ||||| || ||| Sbjct 919 CTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGAGTTGTCATGTCAG 860 Query 35645 TTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCT 35704 | |||||| || || || | || |||| || || || ||| | || || || Sbjct 859 CTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGTGGCTAGTTATTCA 800 Query 35705 CTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACT 35764 || |||||| | |||| || | | |||||||||| || ||| | | || Sbjct 799 CTGCTGACTTACATGATTGCACACCTAACAGACTTAAAACCGGGTGATTTTGTGCATACA 740 Query 35765 CTTGGTGACGCACACATTTATAATACCCACATTGAG 35800 ||||| || |||||||||||| | |||||| ||| Sbjct 739 CTTGGAGATGCACACATTTATCTCAACCACATAGAG 704 >seq1615235 Length=3244 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || ||||| || |||| Sbjct 2988 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 3047 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 3048 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 3093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 948614138496275