Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1557410 205 8e-48 seq1615235 120 3e-22 seq1700391 111 1e-19 seq1599774 98.7 9e-16 seq2307158 86.0 6e-12 >seq1557410 Length=8730 Score = 205 bits (226), Expect = 8e-48 Identities = 605/915 (66%), Gaps = 27/915 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||| ||| | |||| || | || | Sbjct 6509 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGACATTTGCCTACTC-TCTTCTCAA 6567 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 6568 AGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTC 6627 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 ||| || || |||| | || | ||| ||||| || || || | |||| Sbjct 6628 GGAAAACCTTGCTGAAACCCAGTTCCAGCCTAAGTCTGTCTGCCACAAACTCAACGTACT 6687 Query 11487 GAGACATTAAACAACAATT-CATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 | |||||| ||||| ||| | | | | |||| | | || | || | |||| Sbjct 6688 GCTCCATTAACATGCAATTTCATCGCAAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAAC 6747 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGG 11604 |||| |||||| |||| |||| | ||||| ||| | || | || ||||| Sbjct 6748 TCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCTA-ATGGTTT 6806 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| | || ||||| |||||| ||||||| || ||||| || Sbjct 6807 GTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCT 6866 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 | ||||||| |||||||| | || ||||||| ||||| ||| |||| ||| ||||| Sbjct 6867 AGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATAT 6926 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| ||||||||||||| || || ||||| || ||||| ||||| || ||| Sbjct 6927 CGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTC 6986 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||| || || ||| ||| ||||| || |||||| || ||| | | || Sbjct 6987 TCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGAC 7046 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| || || || | | |||| | ||||| || |||| | | Sbjct 7047 ACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTAGAATCTTTAATG 7104 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || || | ||||||||| | ||||| || |||| | || ||||| || Sbjct 7105 TAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAG 7164 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| || ||||||| | | | | ||||| || | || || Sbjct 7165 CCATAGAAACAGTAGGCTTCTGAAC----TTCTTGGCC--AAAAT-GCGCCACCAAGTTG 7217 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| | | ||||| | |||||| || || || | | | ||| || || | Sbjct 7218 TCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAA--ATGTC 7275 Query 12080 TCGTCTTTAGTTAAT--TTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCTTC 12135 || ||| | | | ||||| | ||||| || || || | ||| || || || Sbjct 7276 TCTTCTCAGGCTTCTGGGCTTCCCAGT--GCTAAATGTCCTTGGAAAGATCCACCTCCTC 7333 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | |||||||| | | | | || ||||||||| ||| |||||||| || | ||| Sbjct 7334 CGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAAT 7393 Query 12196 AGGGAAAATAACGAA 12210 |||||| || || || Sbjct 7394 AGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 2991 ACAACACGTTCTCC 2978 >seq1700391 Length=5054 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 3357 CGACCACTCTTTCCCC 3372 >seq1599774 Length=14829 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | || | || Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || |||||||| | ||| || Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTT 8833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||| | ||||| || ||||| || || ||||||||| Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 6483 CTGTTTCTTATACCAT 6468 >seq2307158 Length=1450 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | |||||||| ||||| | ||||| | || || | | ||| Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| ||| || |||| || || | |||||| |||| |||||| ||||| | | Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 191 ATATGCTGTGGTCTTTC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449600468389200