Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 205 8e-48
seq1615235 120 3e-22
seq1700391 111 1e-19
seq1599774 98.7 9e-16
seq2307158 86.0 6e-12
>seq1557410
Length=8730
Score = 205 bits (226), Expect = 8e-48
Identities = 605/915 (66%), Gaps = 27/915 (3%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | | ||| | ||| |||||| | ||| ||| | |||| || | || |
Sbjct 6509 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGACATTTGCCTACTC-TCTTCTCAA 6567
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || || ||||| ||||| ||||| |||| |||||||||| ||| ||||| | |||
Sbjct 6568 AGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTC 6627
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
||| || || |||| | || | ||| ||||| || || || | ||||
Sbjct 6628 GGAAAACCTTGCTGAAACCCAGTTCCAGCCTAAGTCTGTCTGCCACAAACTCAACGTACT 6687
Query 11487 GAGACATTAAACAACAATT-CATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545
| |||||| ||||| ||| | | | | |||| | | || | || | ||||
Sbjct 6688 GCTCCATTAACATGCAATTTCATCGCAAAGTGCTTCACCAGCAAGGCCTCAGTGAGAAAC 6747
Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGG 11604
|||| |||||| |||| |||| | ||||| ||| | || | || |||||
Sbjct 6748 TCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCTA-ATGGTTT 6806
Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
|||| | ||||| ||||| | || ||||| |||||| ||||||| || ||||| ||
Sbjct 6807 GTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCT 6866
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
| ||||||| |||||||| | || ||||||| ||||| ||| |||| ||| |||||
Sbjct 6867 AGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATAT 6926
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
| ||||| ||||||||||||| || || ||||| || ||||| ||||| || |||
Sbjct 6927 CGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTC 6986
Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841
||| || || ||| ||| ||||| || |||||| || ||| | | ||
Sbjct 6987 TCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGAC 7046
Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| ||| ||||| || || || | | |||| | ||||| || |||| | |
Sbjct 7047 ACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTAGAATCTTTAATG 7104
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || || || | ||||||||| | ||||| || |||| | || ||||| ||
Sbjct 7105 TAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAG 7164
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019
||||||||||| || ||||||| | | | | ||||| || | || ||
Sbjct 7165 CCATAGAAACAGTAGGCTTCTGAAC----TTCTTGGCC--AAAAT-GCGCCACCAAGTTG 7217
Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079
|||||||| | | ||||| | |||||| || || || | | | ||| || || |
Sbjct 7218 TCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAA--ATGTC 7275
Query 12080 TCGTCTTTAGTTAAT--TTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCTTC 12135
|| ||| | | | ||||| | ||||| || || || | ||| || || ||
Sbjct 7276 TCTTCTCAGGCTTCTGGGCTTCCCAGT--GCTAAATGTCCTTGGAAAGATCCACCTCCTC 7333
Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195
| |||||||| | | | | || ||||||||| ||| |||||||| || | |||
Sbjct 7334 CGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAAT 7393
Query 12196 AGGGAAAATAACGAA 12210
|||||| || || ||
Sbjct 7394 AGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||||| ||||||||| ||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| |||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 2991 ACAACACGTTCTCC 2978
>seq1700391
Length=5054
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| || || || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 3357 CGACCACTCTTTCCCC 3372
>seq1599774
Length=14829
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||
Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || |||||||| || || |||||||| ||||||||||| | | || | ||
Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| ||||| || ||||| || |||||||| | ||| ||
Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTT 8833
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || | ||||| | ||||| || ||||| || || |||||||||
Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 6483 CTGTTTCTTATACCAT 6468
>seq2307158
Length=1450
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | |||||||| ||||| | ||||| | || || | | |||
Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| ||| || |||| || || | |||||| |||| |||||| ||||| | |
Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192
Query 38533 ATATGTTGTGGTCTTTC 38549
||||| |||||||||||
Sbjct 191 ATATGCTGTGGTCTTTC 175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449600468389200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |