Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1557410 255 7e-63 seq1715327 174 2e-38 seq1615235 114 2e-20 seq1599774 113 6e-20 seq1700391 107 2e-18 seq1725941 105 8e-18 seq2307158 89.7 6e-13 >seq1557410 Length=8730 Score = 255 bits (282), Expect = 7e-63 Identities = 419/600 (70%), Gaps = 12/600 (2%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || || || ||| |||||| ||||| ||| | | ||| Sbjct 6817 TGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCA 6876 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 | |||||| ||||| || ||||| || || | || || ||||| ||||| || ||||| Sbjct 6877 TAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAA 6936 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 | ||||||||||| || ||||| ||||| |||||||| | || ||||| || | Sbjct 6937 AAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTA 6996 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | |||| ||||| | |||||| |||||| | | ||||||||||| Sbjct 6997 GCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATC 7056 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 || || || ||||| |||||| | | |||| ||| |||||||| || || ||||| Sbjct 7057 GTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATA 7116 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 |||||||||||||| | ||||| ||||||| |||| ||||| || || |||||||| Sbjct 7117 AAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA- 7175 Query 36500 CTAGCCTCGGTAATCTGTACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 ||| || |||| ||||| || |||||| | | | || || ||||| ||| | Sbjct 7176 GTAGGCT------TCTGAACTTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGT 7228 Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGT 36618 | |||||| |||||||| || |||| ||| | ||| |||| | | | | || | Sbjct 7229 GCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTT 7288 Query 36619 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 | | ||| | | || || || || | |||||| || ||| | |||||||| || Sbjct 7289 CTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGA 7348 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | ||| || || |||||||| ||| || ||||| |||| ||| || || || ||||| Sbjct 7349 AGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1715327 Length=5042 Score = 174 bits (192), Expect = 2e-38 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 9205 TTTATTAATTCTATTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGAT 9264 ||||| || || ||| || ||| || |||||| | |||||| || ||||||| | Sbjct 2549 TTTATACATACTGCTTTCAA--TTACTTTTTATTAACTGCTTCCAGAAATCGTAACAGGT 2606 Query 9265 GCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAG 9324 ||| ||| ||||||||||||||||| |||| |||| | ||||| ||||| ||||||| Sbjct 2607 GCAGGAATAGATTGATGATATCCAAATAGAGGCTGATGGCAGCTAATACATACTCTTCAG 2666 Query 9325 GCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGG 9384 | || || ||||| || |||| ||| ||||||||||| |||||||||||||| | ||||| Sbjct 2667 GTGACAGTTTATGCATCAGTGCGTGTGTGTCATAGATGATGAATCCGCAGAAAAGAAGGG 2726 Query 9385 CCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432 | || ||||| || ||||| ||||||||| ||| | | | ||||| Sbjct 2727 CTCCTCCAGCAGCCAAGACCAACTCCACTGTCTCATTATAAAAAAATA 2774 >seq1615235 Length=3244 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 36300 C 36300 | Sbjct 2993 C 2993 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||| || |||||||| |||||| Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268 >seq1599774 Length=14829 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 6483 CTGTTTCTTATACCATA 6467 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819 >seq1700391 Length=5054 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3357 >seq1725941 Length=6718 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | ||| |||| | Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 3163 AGGCTCCAGGTAGATAGC 3180 >seq2307158 Length=1450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||| | ||| | || | || || ||||| || | ||||||||||| || |||||| Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || | |||||||| || || || || ||||| || | || || || || ||||| Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 ||||| | || | ||| ||||| ||||| ||||||||| Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631588336756200