Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 255 7e-63
seq1715327 174 2e-38
seq1615235 114 2e-20
seq1599774 113 6e-20
seq1700391 107 2e-18
seq1725941 105 8e-18
seq2307158 89.7 6e-13
>seq1557410
Length=8730
Score = 255 bits (282), Expect = 7e-63
Identities = 419/600 (70%), Gaps = 12/600 (2%)
Strand=Plus/Plus
Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202
||||| ||||||| || || || || || ||| |||||| ||||| ||| | | |||
Sbjct 6817 TGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCA 6876
Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262
| |||||| ||||| || ||||| || || | || || ||||| ||||| || |||||
Sbjct 6877 TAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAA 6936
Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319
| ||||||||||| || ||||| ||||| |||||||| | || ||||| || |
Sbjct 6937 AAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTA 6996
Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379
| | |||| ||||| | |||||| |||||| | | |||||||||||
Sbjct 6997 GCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATC 7056
Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439
|| || || ||||| |||||| | | |||| ||| |||||||| || || |||||
Sbjct 7057 GTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATA 7116
Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499
|||||||||||||| | ||||| ||||||| |||| ||||| || || ||||||||
Sbjct 7117 AAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA- 7175
Query 36500 CTAGCCTCGGTAATCTGTACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558
||| || |||| ||||| || |||||| | | | || || ||||| ||| |
Sbjct 7176 GTAGGCT------TCTGAACTTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGT 7228
Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGT 36618
| |||||| |||||||| || |||| ||| | ||| |||| | | | | || |
Sbjct 7229 GCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTT 7288
Query 36619 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678
| | ||| | | || || || || | |||||| || ||| | |||||||| ||
Sbjct 7289 CTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGA 7348
Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
| ||| || || |||||||| ||| || ||||| |||| ||| || || || |||||
Sbjct 7349 AGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1715327
Length=5042
Score = 174 bits (192), Expect = 2e-38
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 9205 TTTATTAATTCTATTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGAT 9264
||||| || || ||| || ||| || |||||| | |||||| || ||||||| |
Sbjct 2549 TTTATACATACTGCTTTCAA--TTACTTTTTATTAACTGCTTCCAGAAATCGTAACAGGT 2606
Query 9265 GCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAG 9324
||| ||| ||||||||||||||||| |||| |||| | ||||| ||||| |||||||
Sbjct 2607 GCAGGAATAGATTGATGATATCCAAATAGAGGCTGATGGCAGCTAATACATACTCTTCAG 2666
Query 9325 GCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGG 9384
| || || ||||| || |||| ||| ||||||||||| |||||||||||||| | |||||
Sbjct 2667 GTGACAGTTTATGCATCAGTGCGTGTGTGTCATAGATGATGAATCCGCAGAAAAGAAGGG 2726
Query 9385 CCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432
| || ||||| || ||||| ||||||||| ||| | | | |||||
Sbjct 2727 CTCCTCCAGCAGCCAAGACCAACTCCACTGTCTCATTATAAAAAAATA 2774
>seq1615235
Length=3244
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| |||||||
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 36300 C 36300
|
Sbjct 2993 C 2993
Score = 105 bits (116), Expect = 8e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||| | ||| || |||||||| ||||||
Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268
>seq1599774
Length=14829
Score = 113 bits (124), Expect = 6e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| |||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 6483 CTGTTTCTTATACCATA 6467
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || |||||||| || |||||| ||| | || || || |||||||| |
Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| ||| || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819
>seq1700391
Length=5054
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| || || || || | ||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3357
>seq1725941
Length=6718
Score = 105 bits (116), Expect = 8e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| |||||||||||||| | || | ||| |||| |
Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 3163 AGGCTCCAGGTAGATAGC 3180
>seq2307158
Length=1450
Score = 89.7 bits (98), Expect = 6e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494
||||| | ||| | || | || || ||||| || | ||||||||||| || ||||||
Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273
Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554
|| | |||||||| || || || || ||||| || | || || || || |||||
Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213
Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593
||||| | || | ||| ||||| ||||| |||||||||
Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631588336756200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |