Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 293 3e-74
seq1615235 129 8e-25
seq1599774 114 2e-20
seq1725941 107 3e-18
seq1700391 107 3e-18
seq2307158 84.2 3e-11
>seq1557410
Length=8730
Score = 293 bits (324), Expect = 3e-74
Identities = 638/943 (68%), Gaps = 23/943 (2%)
Strand=Plus/Plus
Query 49610 TTCTTTAA-AAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCC 49665
||| |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||||
Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536
Query 49666 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 49725
|| | || ||| || || | || || || || || || |||||||||| ||| |||
Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596
Query 49726 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 49785
|| ||||| || ||||| ||||| || ||| || | || |||| |||
Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC 6656
Query 49786 ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT-CATTCCTAT 49844
| | ||| || || ||||| || | || | ||| | ||||| ||| | |
Sbjct 6657 CTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAA 6716
Query 49845 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904
| || || | | ||| |||| ||||| || ||||| || || |||| | ||
Sbjct 6717 GTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAAT 6776
Query 49905 AATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAACAT 49962
|| | | || | ||| | || ||| || | | ||||| ||||||| ||
Sbjct 6777 TATTTCTTTTAC--TCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAG 6834
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|| || || || | | |||||| ||||| ||| | ||||| | |||||| ||||| ||
Sbjct 6835 GCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCA 6894
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||| || || | || || ||||| ||||| || ||||| | ||||||||||||||
Sbjct 6895 GGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATG 6954
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATC 50139
||||| |||||||||||||| |||| ||||| || | || |||| |||
Sbjct 6955 CCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATC 7014
Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199
|| | |||||| |||||| | | ||||||||||||||||| |||||||| |||
Sbjct 7015 CAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAG 7074
Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259
||| | | |||| ||| |||||||| ||||| || || |||||||||||||| |
Sbjct 7075 AGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTA 7134
Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319
||||| ||||||| |||| || || || || |||||||| ||| || ||||
Sbjct 7135 GAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA-GTAGGCT------TCTGA 7187
Query 50320 ACTTC-TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378
||||| || |||||| | | | || || ||||| ||| | | |||||| ||||||||
Sbjct 7188 ACTTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAA 7246
Query 50379 AAACGCCAATACATGTTTTATAAAATGT-TTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437
|| |||| ||| | ||| |||||| | ||| || | | | | | ||| | |
Sbjct 7247 GAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCT-TCCCAGTGCT 7305
Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497
|| || || || | ||| || || ||| | |||||||| || | ||| || || ||||
Sbjct 7306 AAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTAT 7365
Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|||| ||| || ||||| |||| || ||||| || |||||
Sbjct 7366 ACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| |||||||
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 50102 CAACAA 50107
| ||||
Sbjct 2993 CTACAA 2988
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | ||| || |||||||| ||||||
Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268
>seq1599774
Length=14829
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| |||||||| || |||||| ||| | || || || |||||||| |
Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| ||| || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||| |||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 6483 CTGTTTCTTATACCATA 6467
>seq1725941
Length=6718
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| |||||||||||||| | || ||||| |||| | ||
Sbjct 3047 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 3106
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || |||||||| ||
Sbjct 3107 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 3166
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 3167 TCCAGGTAGATAGC 3180
>seq1700391
Length=5054
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| || || || || ||||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358
Query 50104 ACAAGTCTCTCTCC 50117
|| | ||| || ||
Sbjct 3359 ACCACTCTTTCCCC 3372
>seq2307158
Length=1450
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||| | ||| | || | || || ||||| || | ||||||||||| || ||||||
Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433
|| | ||||| || || || || || ||||| || | || || || || |||||
Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213
Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472
||||| | || | ||| ||||| ||||| |||||||||
Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 689256980440200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |