Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1557410 194 2e-44 seq1615235 129 5e-25 seq1769580 104 2e-17 >seq1557410 Length=8730 Score = 194 bits (214), Expect = 2e-44 Identities = 614/938 (65%), Gaps = 24/938 (3%) Strand=Plus/Plus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13585 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 6486 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 6544 Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 | ||| | ||||| || ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 6545 ACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCAT 6604 Query 13646 AAAATCAAATGGATTTATTGA-CATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 ||| |||||||||||| | | ||| ||| | | |||| ||||| | | || Sbjct 6605 AAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGA-AACCCAGTTCCAGCCTAAGTC 6663 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT-CATACCTATTAGTTTT 13763 | || || | |||||||| || || |||||| ||||| ||| | | | || Sbjct 6664 TGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAAGTGCTTC 6723 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || | | | || | ||| || | |||||| ||||| | | || || || Sbjct 6724 ACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTAT--TT 6781 Query 13824 GTAATAATCTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881 | || |||| | || || | | || ||||| || || | || ||||| | Sbjct 6782 CTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 6841 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 ||||| | | ||||||||||| ||| ||||||| | |||||||| | || ||||||| Sbjct 6842 CACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCA 6901 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 ||||| ||| |||| ||| ||||| | ||||| | || |||||||| || || || | Sbjct 6902 GTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCA 6961 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 |||| ||||| |||| | ||||||| | | || | ||||| | ||||| Sbjct 6962 CTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACA 7021 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 | ||| || | || | | | | || ||| |||||||| ||||| || | | ||| Sbjct 7022 AGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 7081 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 || | ||||||| | | |||||| || ||||||| | |||||||| | ||| || | Sbjct 7082 CCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCA 7141 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||||| | || || || || ||||| || || ||||| || ||||| Sbjct 7142 TGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTC-------TGAACTTCTT 7194 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC- 14300 | ||| | |||| || ||||| ||| | | ||||| |||||||| || ||| Sbjct 7195 GGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCA 7254 Query 14301 -AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA-- 14357 || | | | || || | | || ||| || | || ||| | | |||| Sbjct 7255 GAACACGAGAT--ATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGT--GCTAAATG 7310 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||| |||||||| || || || | |||||||| || ||||||| ||||||||| Sbjct 7311 TCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATT 7370 Query 14418 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| || || | ||| ||||| || | ||||| Sbjct 7371 CACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 129 bits (142), Expect = 5e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| || || || ||||||||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 2993 CTACAACACGTTCTCC 2978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 1367 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1308 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 1307 GAAGCCATAGAAACAGCGAGCTTC 1284 >seq1769580 Length=2278 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1470 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1412 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1411 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1352 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 1351 CATAAAGTCAAATGGATTT 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460351156437000