Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 190 2e-43
seq1615235 123 2e-23
seq1769580 95.1 1e-14
>seq1557410
Length=8730
Score = 190 bits (210), Expect = 2e-43
Identities = 614/938 (65%), Gaps = 24/938 (3%)
Strand=Plus/Plus
Query 13315 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13373
|| ||| |||| || | |||| ||| || | || | | || || || ||||| | ||
Sbjct 6486 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 6544
Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433
| ||| | ||||| || ||||| ||||| || || ||||||||||| ||||| |||||
Sbjct 6545 ACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCAT 6604
Query 13434 AAAATCGAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492
||| || ||||||||| | | ||| ||| | | |||| ||||| | | ||
Sbjct 6605 AAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGA-AACCCAGTTCCAGCCTAAGTC 6663
Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT-CATACCTATTAGTTTT 13551
| || || | |||||||| || || |||||| ||||| ||| | | | ||
Sbjct 6664 TGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAAGTGCTTC 6723
Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611
|| | | | ||| | ||| || | |||||| ||||| | | | || || ||
Sbjct 6724 ACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATT-TC 6782
Query 13612 TTAATAATGTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669
|| || | || | || || | | || ||||| || || | || ||||| |
Sbjct 6783 TTT-TACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 6841
Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729
||||| | | ||||||||||| ||| ||||||| | |||||||| | || |||||||
Sbjct 6842 CACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCA 6901
Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789
||||| ||| |||| ||| ||||| | || || | || |||||||| || || || |
Sbjct 6902 GTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCA 6961
Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849
|||| ||||| |||| | ||||||| | | || | ||||| |||||
Sbjct 6962 CTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACA 7021
Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909
| ||| || | || | | | | || ||| ||||| || |||||||| | | ||
Sbjct 7022 AGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 7081
Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969
|| | ||||||| | | |||||| || ||||||| | |||||||| | ||| || |
Sbjct 7082 CCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCA 7141
Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029
|||||| | | || || || || ||||| ||||| |||||||| || ||
Sbjct 7142 TGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTGA-------ACTTCTT 7194
Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC- 14088
| ||| | ||||||| ||||| || | | ||||| |||||||| || |||
Sbjct 7195 GGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCA 7254
Query 14089 -AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145
|| | | | || || | | || ||| || | || ||| | ||||||
Sbjct 7255 GAACACGAGAT--ATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGT--GCTAAATG 7310
Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205
||||| |||||||| || || || | |||||||| || ||||||| |||||||||
Sbjct 7311 TCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATT 7370
Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||| || || | ||| ||||| || | |||||
Sbjct 7371 CACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||||| || || || || |||||||| || || || ||||||||||| |
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 2993 CTACAACACGTTCTCC 2978
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
|||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 1367 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1308
Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | ||||||||
Sbjct 1307 GAAGCCATAGAAACAGCGAGCTTCTG 1282
>seq1769580
Length=2278
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1470 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1412
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
|||||||| | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 1411 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1352
Query 13431 CATAAAATCGAATGGATTT 13449
|||||| || |||||||||
Sbjct 1351 CATAAAGTCAAATGGATTT 1333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 459257970220200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |