Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1557410 190 2e-43 seq1615235 123 2e-23 seq1769580 95.1 1e-14 >seq1557410 Length=8730 Score = 190 bits (210), Expect = 2e-43 Identities = 614/938 (65%), Gaps = 24/938 (3%) Strand=Plus/Plus Query 13315 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13373 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 6486 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 6544 Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 | ||| | ||||| || ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 6545 ACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCAT 6604 Query 13434 AAAATCGAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 ||| || ||||||||| | | ||| ||| | | |||| ||||| | | || Sbjct 6605 AAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGA-AACCCAGTTCCAGCCTAAGTC 6663 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT-CATACCTATTAGTTTT 13551 | || || | |||||||| || || |||||| ||||| ||| | | | || Sbjct 6664 TGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAAGTGCTTC 6723 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 || | | | ||| | ||| || | |||||| ||||| | | | || || || Sbjct 6724 ACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATT-TC 6782 Query 13612 TTAATAATGTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 || || | || | || || | | || ||||| || || | || ||||| | Sbjct 6783 TTT-TACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 6841 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 ||||| | | ||||||||||| ||| ||||||| | |||||||| | || ||||||| Sbjct 6842 CACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCA 6901 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||| ||| |||| ||| ||||| | || || | || |||||||| || || || | Sbjct 6902 GTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCA 6961 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||| ||||| |||| | ||||||| | | || | ||||| ||||| Sbjct 6962 CTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACA 7021 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 | ||| || | || | | | | || ||| ||||| || |||||||| | | || Sbjct 7022 AGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 7081 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | ||||||| | | |||||| || ||||||| | |||||||| | ||| || | Sbjct 7082 CCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCA 7141 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 |||||| | | || || || || ||||| ||||| |||||||| || || Sbjct 7142 TGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTGA-------ACTTCTT 7194 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC- 14088 | ||| | ||||||| ||||| || | | ||||| |||||||| || ||| Sbjct 7195 GGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCA 7254 Query 14089 -AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145 || | | | || || | | || ||| || | || ||| | |||||| Sbjct 7255 GAACACGAGAT--ATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGT--GCTAAATG 7310 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 ||||| |||||||| || || || | |||||||| || ||||||| ||||||||| Sbjct 7311 TCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATT 7370 Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| || || | ||| ||||| || | ||||| Sbjct 7371 CACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| || || || ||||||||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 2993 CTACAACACGTTCTCC 2978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 1367 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1308 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 1307 GAAGCCATAGAAACAGCGAGCTTCTG 1282 >seq1769580 Length=2278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1470 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1412 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 1411 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1352 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 1351 CATAAAGTCAAATGGATTT 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459257970220200