Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1557410 268 1e-66 seq1615235 123 3e-23 seq1700391 111 2e-19 seq1599774 111 2e-19 seq1725941 107 2e-18 seq2307158 84.2 3e-11 >seq1557410 Length=8730 Score = 268 bits (296), Expect = 1e-66 Identities = 627/940 (67%), Gaps = 17/940 (2%) Strand=Plus/Plus Query 41715 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 41770 ||| |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 41771 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATA 41830 || | || ||| || || | || || || || || ||||||||||||| ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 41831 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 41890 || ||||| || ||||| ||||| || ||| || | || |||| ||| Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC 6656 Query 41891 ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT-CATTCCTAT 41949 | | ||| ||||| | || || | || | ||| | ||||| ||| | | Sbjct 6657 CTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAA 6716 Query 41950 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 | || || | | ||| |||| ||||| || ||||| || || || | | || Sbjct 6717 GTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAAT 6776 Query 42010 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 || | ||||| | | || ||| | | | ||||| ||||||| || || Sbjct 6777 TATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGC 6836 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 || || || | | |||||||||||| ||| | | ||| | |||||| ||||| || || Sbjct 6837 AAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGG 6896 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| || || | || || ||||| ||||| || ||||| | |||||||||||||| || Sbjct 6897 CATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCC 6956 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCA 42246 ||| ||||| |||||||| | || ||||| || | | | |||| ||||| Sbjct 6957 TTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCA 7016 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | |||||| |||||| | | ||||||||||||||||| |||||||| ||||| Sbjct 7017 ACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | | | |||| ||| |||||||| || || || || |||||||||||||| | || Sbjct 7077 AAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGA 7136 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 ||| ||||||| |||| || || || || |||||||| ||| | ||| || Sbjct 7137 ATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTT-------CTGAAC 7189 Query 42427 TTC-TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 ||| || |||||| | | | || || || || ||| | | |||||| |||||||| | Sbjct 7190 TTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGA 7248 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | |||| ||| | ||| |||| | | | || || | | ||| | | | Sbjct 7249 AAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAA 7308 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 | || || || | ||| || || || |||||||||| || | || || || ||||||| Sbjct 7309 TGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 7368 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | ||| |||||||| |||| ||| ||||| || ||||| Sbjct 7369 TTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 42207 C 42207 | Sbjct 2993 C 2993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | || || |||| ||| |||||| Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268 >seq1700391 Length=5054 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3357 >seq1599774 Length=14829 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 6483 CTGTTTCTTATACCAT 6468 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || || || || | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819 Score = 82.4 bits (90), Expect = 1e-10 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | | | ||| || ||||| || || || | ||||||||| Sbjct 2379 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAGGGCTCCATAA 2320 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| ||||| || || | |||||| | ||| || || | || ||||| ||||| Sbjct 2319 TAAATAGTTTCAAAGATTTGCTTATTCAATAATTGGGCCTCTGCACTCTCAAAAGGATAT 2260 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | || ||||| || ||||||| ||||| || ||||| || || || | || | Sbjct 2259 CTCATCAGGATAAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 2200 Query 71563 TTATTAGA 71570 ||||| || Sbjct 2199 TTATTTGA 2192 >seq1725941 Length=6718 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || ||||| |||| | || Sbjct 3047 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 3106 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || |||||||| || Sbjct 3107 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 3166 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 3167 TCCAGGTAGATAGC 3180 >seq2307158 Length=1450 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || | || || ||||| || | ||||||||||| || |||||| Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || | ||||| || || || || || ||||| || | || || || || || || Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 ||||| | || | ||| ||||||||||| ||||||||| Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 644031006841800