Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2031399 100 3e-16 >seq2031399 Length=344 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 176 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| | ||||| | ||||||||| ||||| || ||||| || | Sbjct 175 CTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 116 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || |||| | ||| | || |||| |||||| || || | ||| | | Sbjct 115 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAG 56 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||||||||| || ||||| Sbjct 55 TCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486535422927600