Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq2031399 100 2e-16
seq1852988 87.8 1e-12
seq1799193 82.4 5e-11
>seq2031399
Length=344
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 248 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 189
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 188 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 129
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| ||||||| ||||| ||| ||
Sbjct 128 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 69
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || || || || ||||| || |||||||| ||||| ||||| ||
Sbjct 68 TCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1852988
Length=3013
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
||| || || | |||||| ||||| | ||||| |||||||| || | | | | |
Sbjct 2213 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTC----AAAGTACATCC 2158
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
| ||| | ||| |||||||| | |||| | ||| || || ||||||||||| ||
Sbjct 2157 ATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 2098
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| || ||| ||||||| ||||| | ||||| ||| || || | || ||
Sbjct 2097 ATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGAT 2038
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||| || ||||| || |||||||| ||||| ||||| ||
Sbjct 2037 GGTCTTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999
>seq1799193
Length=4297
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAAT-TCTCG 15206
||| || || | |||||| ||||| | ||||| |||||||| || | | | | ||
Sbjct 2091 TCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTATGTC- 2033
Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266
| ||||||| ||| |||| ||| | || | | |||||| || ||||||||||| |
Sbjct 2032 CATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCT 1973
Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326
| || ||| ||| ||||||| ||||| | ||||| ||| || || | || |
Sbjct 1972 TATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGA 1913
Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| || ||||| || |||||| ||||| | |||
Sbjct 1912 TGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347916029083005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |