Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2031399 98.7 6e-16 >seq2031399 Length=344 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||||| | || || Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 175 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 174 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 114 CTGGATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 58 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || ||||| |||||||||||||| ||||| || Sbjct 57 AGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 306223650481890