Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1683812 152 4e-32 seq399366 86.0 5e-12 >seq1683812 Length=3291 Score = 152 bits (168), Expect = 4e-32 Identities = 125/152 (82%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 2047 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 2106 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 |||||||| || || ||||| || ||||||||||||||||| | ||| |||||||||||| Sbjct 2107 CCGCAGGCTGAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAAAG 2166 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || | ||| | || || ||||| ||||| Sbjct 2167 CTGAAGAATCTGAGGCTGCGGCTGCGGCGCTG 2198 >seq399366 Length=1397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 |||||| || |||||| ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 798 GCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 857 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 858 AGAAACCTACATGAC 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430120378308915