Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1683812 136 3e-27 seq399366 89.7 4e-13 >seq1683812 Length=3291 Score = 136 bits (150), Expect = 3e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| ||||||||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2056 GGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATGCCGCAGGCT 2115 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||||| || ||||| ||||| ||||| | |||||||| ||||||||||||| Sbjct 2116 GAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAAAGCTGAAGAAT 2175 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 |||| || || ||||| ||||| Sbjct 2176 CTGAGGCTGCGGCTGCGGCGCTG 2198 >seq399366 Length=1397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || | |||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 797 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 856 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 857 TAGAAACCTACATG 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413118199879160