Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq394582 279 3e-70 seq1611918 156 3e-33 seq1921304 107 1e-18 seq1537755 93.3 3e-14 >seq394582 Length=1925 Score = 279 bits (308), Expect = 3e-70 Identities = 478/686 (70%), Gaps = 7/686 (1%) Strand=Plus/Plus Query 25283 TGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 25342 ||||||| ||| |||||| |||||| || | |||||||| | ||||||||| Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616 Query 25343 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 25402 |||||||| || | | || |||| || | |||||||| |||||||| || Sbjct 617 TTTAAAGTCATCAATACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTTGG 676 Query 25403 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCC 25462 ||||| | |||| | || | || |||| ||| | || || | ||| || ||||| Sbjct 677 GGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCTCC 736 Query 25463 CAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAG 25522 || || || ||||| || ||||||| || | || | || || |||||||| || || Sbjct 737 AAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTCAG 796 Query 25523 GAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGT 25582 || | || || || | ||||| || ||||| | |||||||||||| || ||||| | Sbjct 797 CAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCC-GATCTCTGAT 855 Query 25583 AGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAG 25642 | |||||||| || | |||| | | ||| ||||| || | ||||| || |||| Sbjct 856 AAAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGAG 915 Query 25643 GAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTT 25702 | || || || ||| | ||| || || |||||||| |||| ||||| | |||||| Sbjct 916 GCAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTCA- 974 Query 25703 CTGGG-TTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAG 25761 ||||| || | ||||| || ||||| || || || | ||| || || Sbjct 975 CTGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGAA 1034 Query 25762 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACC 25821 || |||| ||||||| |||| |||||||| || | ||||||||| || || || | Sbjct 1035 TAATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGATA 1094 Query 25822 GGTCCTAGGTCTCCATC--TTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGG 25879 ||||| ||||| || || ||| || | | ||| | | || || ||||||||||| | Sbjct 1095 GGTCCCAGGTCACCCTCGGTTCTATGAG-TGAAACCGTGT-TTGTCTAAAAAGTCTCTAG 1152 Query 25880 AACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 25939 | ||||||||||||||||| ||||||||||| || ||||||||||||||||| |||| Sbjct 1153 AGCCATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACC 1212 Query 25940 CTCTGACGAACCACAGCAGCTCCGCC 25965 | | || ||||| || || ||| || Sbjct 1213 CCCGAACAAACCATAGAAGTTCCTCC 1238 >seq1611918 Length=7152 Score = 156 bits (172), Expect = 3e-33 Identities = 381/577 (66%), Gaps = 19/577 (3%) Strand=Plus/Minus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 || || ||||| || || | || |||||| |||||| || || | ||||| | ||| Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 | || || ||||||| ||| || ||||| || || || | ||| || || | || ||| Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 || |||||||| |||||| || || | || | |||||||| Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 || ||| |||||| ||||| || || ||||| ||| ||| || ||||| || | Sbjct 3550 CCT-GACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAG 3493 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 || | ||| | ||| || || || || | ||| | || ||||| || |||| ||| Sbjct 3492 GGCATGGCATGAAGGCAGTGCCATCAGAGGAAGATCTGTTGGATTCCAAGCACACATGAT 3433 Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748 ||| | ||||| || | |||| |||| ||| ||||| || || || || Sbjct 3432 GATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCAAC 3373 Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808 || || || || |||| ||| || |||| ||||| || |||| ||||||||| Sbjct 3372 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCACTG 3313 Query 25809 GAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAA 25868 ||| | | || || || | ||| || ||| | ||| || ||| ||||| Sbjct 3312 GAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAG 3253 Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928 |||||||| ||| || ||||| |||||||| || || ||||| || || ||||| | Sbjct 3252 AAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGC 3193 Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 |||||||| || |||| ||||||||| |||| || Sbjct 3192 ATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCC 3156 >seq1921304 Length=364 Score = 107 bits (118), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| | || || |||||||||||||| || |||||||||||||| || || Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || | | ||||||| | |||||| |||||| ||||| || || ||||| | | Sbjct 295 ACGCTCAGGCCCATGT-CTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCAC 237 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT--AAGGCCCAAG-TCTTT 25667 |||||| ||||| || | | |||||||| || || || |||| ||| ||||| Sbjct 236 CACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTT 180 Query 25668 AGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTG 25710 || ||||| || |||| |||||| | ||||| || |||||| Sbjct 179 TGGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTG 137 >seq1537755 Length=8267 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| || || | || || |||||||| ||||| || ||||||||||||||| || || Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609 || || | ||||||| | || |||| |||||| ||||| || || ||||| ||| Sbjct 5652 CACGCCCAGGCCCATGT-CTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 5710 Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 ||| || ||||| || | || | ||||||||| || || || || Sbjct 5711 CCACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326742461007765