Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq394565 163 3e-35 seq394531 150 2e-31 seq1683812 136 4e-27 seq479572 132 5e-26 seq1948974 122 9e-23 seq399366 100 3e-16 seq394781 87.8 2e-12 seq17494 82.4 8e-11 >seq394565 Length=1059 Score = 163 bits (180), Expect = 3e-35 Identities = 400/604 (66%), Gaps = 2/604 (0%) Strand=Plus/Plus Query 114973 TCCAAACTTTAATATTCTTCGCACCGGCGCCACCTCTTCAATTATATAGTG-TCCGTAAT 115031 ||||| ||| |||| |||| || || |||| |||||||||| || || | | || | Sbjct 399 TCCAACCTTAAATAGTCTTTTCATTGGAGCCAATTCTTCAATTAGGTACTGATTCATA-T 457 Query 115032 GGATGGGGGCGTGTGTCTGTTTGACCGACATAAACTCATCGATGAGTGCCCTGGAGGAGG 115091 | | ||||| || || | ||| |||||||||||||| ||||| || ||| | | Sbjct 458 GTACAGGGGCATGAGTGTTTTTCTGAGACATAAACTCATCTATGAGAGCTCTGTGGCTGC 517 Query 115092 CAGAGAGGGCGGGGAACGCCTCCTGGAGGAAGCTGCATGGCTGCTCCAGGAACACGTCAG 115151 || || | ||| || || ||||| | || || || || |||| || || || | Sbjct 518 TTGAAAGTGTGGGAAATGCTTCCTGTAAAAATTGACAGGGTTGATCCAAAAAGACATCTG 577 Query 115152 TGCCTGCAATCACCACAAACTGCACCTCGGTGTTGCTGGTGGCCGGGTGCCCACCCAGGC 115211 | || || |||||| | |||| |||||||||||||| || || |||| | | Sbjct 578 TTCCATTGATAACCACATATTGCAGATCGGTGTTGCTGGTTGCTGGCCTTCCACATAACC 637 Query 115212 GCTGGCTGTACTCATTGACCATGTTATAGAGGCCCCTGTTGTTGCGCAGCAGCTCCTCCT 115271 | ||| || | |||| | ||| || ||||||||||| | ||| | || |||| Sbjct 638 TGTTAGAGTATTCTGTCACCAAGGTATGAAGTCCCCTGTTGTTTCTCAGTATGTCATCCT 697 Query 115272 TGTTGAAAAACGCCCGGCAGGGACTGTAAAGGCCTGGGACAGCCGTCTGGCGGTAGGAGG 115331 |||| ||||| | || |||||||| | ||||| ||||| |||| | || | || Sbjct 698 TGTTAAAAAATTGTCTACATGGACTGTACATCCCTGGAGCAGCCATCTGTCTATAAGTGG 757 Query 115332 AGTTGTACATGATGTCACCCAGGGAGCCCAGCTGAGAGGCCCAGGGATTCACCGTGCTAC 115391 |||||| | | ||||| || || || ||| |||||||| || || | || | | Sbjct 758 TGTTGTATAACACATCACCAAGAGATCCGGCCTGCGAGGCCCACGGGTTGATTGTATTTC 817 Query 115392 GGTACTCGTAGGCGGCATCCGGGCGGGAGTGGTCATAGATAAGCCCCTCGGCGGCCTCCT 115451 || || || || | || || |||||||||||| | || ||| || ||||| Sbjct 818 TATATTCATAAGCTGGGTCTGGAATGGAGTGGTCATACAAAAATTTCTCAGCTGCCTCAG 877 Query 115452 GGTTGTAGTTCTCGCAGGAAACTACACAGGCAGCGCGTCCCCTCGGGGAGTTGGACTTTT 115511 | || | | || || || | ||||| || || | ||||| || ||| || || Sbjct 878 TGCTGAACGTATCACATGAGATAACACAAGCTGCCCTGCCCCTTGGACTGTTTGAAGATT 937 Query 115512 GAAAATAGGCCACGTCCGCCGTCACCGGGGTAACTATAATCTCACAGGTGGCTTGCTGCC 115571 |||| ||||| || || || || || || || | | ||| |||||||| || |||| | Sbjct 938 GAAAGTAGGCTACATCAGCTGTTACAGGAGTCAACACAATTTCACAGGTTGCAAGCTGAC 997 Query 115572 CATG 115575 | || Sbjct 998 CGTG 1001 >seq394531 Length=2006 Score = 150 bits (166), Expect = 2e-31 Identities = 405/615 (66%), Gaps = 6/615 (1%) Strand=Plus/Plus Query 118405 GTCCAGGAAGAAGGAGTGCTCCAGCAAATGGCGCTTGAACATGGCAATCAGGTCAGACTT 118464 ||| || || || ||||| || | ||| || | ||| ||||| | | || |||||| || Sbjct 785 GTCGAGAAAAAATGAGTGGTCAACCAAGTGACTCTTAAACATAGAGACCATGTCAGATTT 844 Query 118465 GACAGTCTTGGAGAGCCCCCTCTCAGTGAAGGTGGGATCAGCCA-AGGTCTGCAGGATAA 118523 || || || | |||||| ||| | || || || | | || ||| || |||| Sbjct 845 AACTGTTTTTCTTAACCCCCTTTCATCATATGTTGGGTCTGTGAGAGCCCTG-AGAATAA 903 Query 118524 ACATGGGCGGAGCATGGCGCAGCTTCACGCTCAGGACCGTGTTGATGAGGCCCCTCTCCA 118583 ||| || || | || | || || || | | || |||| | || |||||||| | Sbjct 904 ACAATGGGGGTGAGTGTCTCAATTTTACATTTAACACTGTGTCAACAAGACCCCTCTCTA 963 Query 118584 GGGCGTCGACCCCAAACTGGAGGGCAGAGGCCACGGTCTTGACGGCCCCCACGTACTCGG 118643 || || || |||||||| || || || | | || || || ||||| | |||||| | Sbjct 964 ATGCATCAACACCAAACTGAAGAGCTGATGTGATTGTTTTCACAGCCCCAATGTACTCTG 1023 Query 118644 CGTACTCGACCGGGGTCTCGGGGATGCTGTGCA--GAATCTCCAGATCCAGCATGGAGAG 118701 | || | || ||||| ||| ||| | ||| |||||||| || | || | Sbjct 1024 TGATGTCAAGAGGAGTCTCTTT--TGCAGTGTAAAGAAGTTCCAGATCAAGGGTAGACAA 1081 Query 118702 CTCAATTTCCGTACTGATGTGATGTTTGTGGCAATTCTTGACCACGATGAAGGTCCGCTG 118761 |||||| || | ||||| || ||||||| ||| ||| | ||| ||| | ||| Sbjct 1082 CTCAATCTCAGCGCTGATATGGTGTTTGTTGCAGACCTTCATCACTATGTATTGTTTCTG 1141 Query 118762 CTTGCTGGGTCTCCGGCCGTCTCCATGAGCAATGGTGGGGACGGAAATGCGAAATTGAAT 118821 || || ||| || || |||||||| || || || || || || || ||| || || Sbjct 1142 TTTTCTAGGTACGCGTCCATCTCCATGGGCTATTGTTGGCACAGATATTTTAAACTGTAT 1201 Query 118822 CTTGCCATCCGTCATGCGACTCAGGTCTTTGAATTCCGTGTTTACGCAGGACACGGCCAG 118881 || ||||| ||||| | | || || || ||||| ||||| || || || || |||| Sbjct 1202 TTTCCCATCTGTCATTCTTTTTAGATCCTTAAATTCAGTGTTGACACAAGAAACTGCCAA 1261 Query 118882 AGCCGTCTCCAGGAATCGAACGTACTGGATGGCGTTGGTGTAGACCCCGAGCAGCACCTC 118941 || || || | ||| ||| |||||||||||||||| || || || | || ||||| Sbjct 1262 AGAAGTTTCTAAAAATTTAACAAACTGGATGGCGTTGGTATACACACCTAATAGAACCTC 1321 Query 118942 GAACTTGATGCCCGCCTCCCTGGCATCCTTGCCCACAAGCAGATCGAAGCTATGAAACAG 119001 || | | || || || |||| || || | || || || ||||| | ||| || Sbjct 1322 AAATCTAACACCATTTTCTCTCACATCTTTTCCTAGGAGAAGTTCAAAGCTCTTAAAGAG 1381 Query 119002 CCCCTCCGCCGCGGA 119016 |||||| || || || Sbjct 1382 CCCCTCTGCTGCAGA 1396 >seq1683812 Length=3291 Score = 136 bits (150), Expect = 4e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || | Sbjct 2045 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2104 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || | ||| || |||||||||||||| ||| ||||| || | Sbjct 2105 TGCCGCAGGCTGAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAA 2164 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||| || ||||| || |||| Sbjct 2165 AGCTGAAGAATCTGAGGCTGCGGCTGCG 2192 >seq479572 Length=815 Score = 132 bits (146), Expect = 5e-26 Identities = 308/455 (68%), Gaps = 11/455 (2%) Strand=Plus/Minus Query 150208 GTCACGGTCTCGGCGATGGAGAGGCAGGGGAAGAGGCCGTTGGCCACCCCAGTGAAGCCG 150267 ||||| ||||| ||||| | || || | ||||| || || || || || || Sbjct 489 GTCACAGTCTCTGCGATTTTAACACAAGGAAGTAGGCCTGAAGCAACTCCTGTAAATCCA 430 Query 150268 TAGACGGCGTTGCACGTGCACTTGATGGCCAGCTGCTGCTTGTCCAGGATGGTCTTTTGG 150327 || || || ||||| || || || ||||| || |||||||| || |||||||| | | Sbjct 429 TATACTGCATTGCAGGTACATTTTATGGCTAGTTGCTGCTTATCAAGGATGGT-TCTCAT 371 Query 150328 CGC-GGGTCCTCGCAGGCCGCCAGCAGCTTCTTAATGGCCTTGCGCTTGGCCAGCCAGGA 150386 | | ||||| ||| |||||| ||| | |||| || | ||| || ||||| Sbjct 370 CACAGGGTCTGTGCACTGGGCCAGCTCTTTCCTGATGGATTTTCTCTTTGCAAGCCACAC 311 Query 150387 GGTCAGCAGACTGGCCAGGAAGGACTCGTGCACGTGCTTCTTTACAAAGTGGTAGGTGCC 150446 || | ||| ||||||| || || | |||||||| || ||||| || ||| Sbjct 310 AGTTAACAGTTTGGCCAGTAAAGATACAGATACGTGCTTTTTAACAAAATGAACCAGGCC 251 Query 150447 CCCGGTGAGCCTGAAGGACTCGTAGTCCTC-GCCCGGGCGCAGGCCGGCTAGTCTGT-GC 150504 | | |||| ||| | ||| ||||| || || | | | || | ||| | Sbjct 250 CGAGCTGAGGTGGAAAGTCTCATAGTCATCTGCACCTAA--ATGTGGGTGAAGGTGTAGA 193 Query 150505 TCCTCTTCCGGCGTTATCATGGTAGAATAACAGAGATTATGAGCCTGAATGATGCTCGGG 150564 | ||| || | | |||| |||||| ||||| || || || ||||| || ||||| ||| Sbjct 192 TTCTCATCGG---TGATCAGGGTAGAGTAACACAGGTTGTGTGCCTGTATAATGCTTGGG 136 Query 150565 TAGAGGCTGGCAAAGTCCACCACCAGCACCGGGGAGTTGTAGAAGCC-GGACAGGGGCTG 150623 ||||||||||||||||| || || || || |||| |||||| || || ||| ||||| Sbjct 135 TAGAGGCTGGCAAAGTCTACTACTAGAACGGGGGTGTTGTAAAATCCAGGAAGTGGGCT- 77 Query 150624 GATGACAGTGGCCCCCTGGTAGCCGTCCCTGTCGG 150658 ||| |||||||| |||||||| || || ||| || Sbjct 76 GATAACAGTGGCGCCCTGGTATCCATCAGTGTTGG 42 >seq1948974 Length=2508 Score = 122 bits (134), Expect = 9e-23 Identities = 257/381 (67%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 110788 TTTCAGAGCATCCGGGGCCAGACATTCCACCTGCTGTTTGTGGACGAGGCCAACTTTATC 110847 |||||||||||| | || || || || |||| |||| | || |||||||| ||||| Sbjct 1027 TTTCAGAGCATCAGAGGACAAACTTTTAACCTCCTGTACATCGATGAGGCCAATTTTATT 1086 Query 110848 AAGAAGGAGGCCCTGCCGGCTATCCTGGGCTTTATGCTTCAGAAGGACGCCAAGATTATC 110907 |||||||| | || || || || ||||| |||||| | || || || || ||| | || Sbjct 1087 AAGAAGGACTCTCTTCCTGCAATACTGGGATTTATGTTACAAAAAGATGCTAAGTTGATA 1146 Query 110908 TTCATCTCGTCCGTCAATTCGGCCGATCAGGCCACCAGCTTCCTTTATAAGCTGAAGGAC 110967 || || || || || || || | || || | |||||||| ||| | | | ||| | Sbjct 1147 TTTATATCATCTGTTAACTCTTCTGACCAATCAACCAGCTT-CTTGTTCAATTTAAGAAA 1205 Query 110968 GCGCAG-GAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATTT 111026 ||| || || | || | ||||||||||| || | || || | | |||| Sbjct 1206 TGCCAGTGAAAAAATGTTAAATATTGTAAGTTATGTTTGCCCTGACCACAGAGAGCATTT 1265 Query 111027 TGACATGCAGGACAGCATGGTCTCGTGCCCCTGCTTTCGCCTCCACATCCCGTCTTACAT 111086 | |||||||| | || || || ||||||| | || |||||||| | ||||| Sbjct 1266 TAGTTTGCAGGACTCATTAGTTTCATGTCCCTGCTACAGACTTCACATCCCCACATACAT 1325 Query 111087 CACCATGGATAGCAACATCCGAGCGACCACCAACCTCTTTCTGGACGGGGCCTTTAGCAC 111146 ||| || ||| | || | || || ||||| || |||| |||||||| | ||| Sbjct 1326 CACTATAGATCAAACAATTAAAAACACAACAAACCTTTTCATGGATGGGGCCTTCAACAC 1385 Query 111147 GGAGCTGATGGGCGACACCTC 111167 || ||||||||||| |||| Sbjct 1386 AGAACTGATGGGCGATGCCTC 1406 >seq399366 Length=1397 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 ||||||| || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 797 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 856 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 857 TAGAAACCTACATGACAATGAAGAT 881 >seq394781 Length=1125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 60463 AGAGGGATCTGGAGTTTTACAAGTTCCTATTCACCTTCCTGGCCATGGCCGAGAAGCTGG 60522 |||||||| ||||| ||| |||| ||||| || || | | ||||| || | || | Sbjct 301 AGAGGGATAGAGAGTTCTACCAGTTTCTATTTACATTTTTAGGGATGGCTGAAAGTCTAG 360 Query 60523 TGAACTTTAACATTGATGAACTGGTCACCAGCTTTGAGAGCCACGACATAGATCACTACT 60582 | |||||||||||| || |||| | ||||| | || ||||| |||||| | Sbjct 361 TTAACTTTAACATTAGAGACTTGGTGAAACATTTTGATTGTCATGACATGATTCACTATT 420 Query 60583 ACACGGAGCAGAAGGCTATGGAGAACGTTCACGGGGAGACGTATGCTAACATTCTGAACA 60642 | ||||| | ||| ||||| || |||| |||| | |||||||||||| ||||| | Sbjct 421 ATGATGAGCAAATGGCCATGGAAAATATTCATGGGGTGGTGTATGCTAACATCCTGAATA 480 Query 60643 TGCTGTTT 60650 || | ||| Sbjct 481 TGTTTTTT 488 >seq17494 Length=220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 10301 TTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGCCTTCAGCAAG 10360 ||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 220 TTTCTTCCCTGTGAAAATAAGAGCAAGGCAGTGGAGCAGGTGAAGAATGCCTTCAGTAAG 161 Query 10361 CTG 10363 || Sbjct 160 GTG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525269835676800