Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq394565 163 3e-35
seq394531 150 2e-31
seq1683812 136 4e-27
seq479572 132 5e-26
seq1948974 122 9e-23
seq399366 100 3e-16
seq394781 87.8 2e-12
seq17494 82.4 8e-11
>seq394565
Length=1059
Score = 163 bits (180), Expect = 3e-35
Identities = 400/604 (66%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 114973 TCCAAACTTTAATATTCTTCGCACCGGCGCCACCTCTTCAATTATATAGTG-TCCGTAAT 115031
||||| ||| |||| |||| || || |||| |||||||||| || || | | || |
Sbjct 399 TCCAACCTTAAATAGTCTTTTCATTGGAGCCAATTCTTCAATTAGGTACTGATTCATA-T 457
Query 115032 GGATGGGGGCGTGTGTCTGTTTGACCGACATAAACTCATCGATGAGTGCCCTGGAGGAGG 115091
| | ||||| || || | ||| |||||||||||||| ||||| || ||| | |
Sbjct 458 GTACAGGGGCATGAGTGTTTTTCTGAGACATAAACTCATCTATGAGAGCTCTGTGGCTGC 517
Query 115092 CAGAGAGGGCGGGGAACGCCTCCTGGAGGAAGCTGCATGGCTGCTCCAGGAACACGTCAG 115151
|| || | ||| || || ||||| | || || || || |||| || || || |
Sbjct 518 TTGAAAGTGTGGGAAATGCTTCCTGTAAAAATTGACAGGGTTGATCCAAAAAGACATCTG 577
Query 115152 TGCCTGCAATCACCACAAACTGCACCTCGGTGTTGCTGGTGGCCGGGTGCCCACCCAGGC 115211
| || || |||||| | |||| |||||||||||||| || || |||| | |
Sbjct 578 TTCCATTGATAACCACATATTGCAGATCGGTGTTGCTGGTTGCTGGCCTTCCACATAACC 637
Query 115212 GCTGGCTGTACTCATTGACCATGTTATAGAGGCCCCTGTTGTTGCGCAGCAGCTCCTCCT 115271
| ||| || | |||| | ||| || ||||||||||| | ||| | || ||||
Sbjct 638 TGTTAGAGTATTCTGTCACCAAGGTATGAAGTCCCCTGTTGTTTCTCAGTATGTCATCCT 697
Query 115272 TGTTGAAAAACGCCCGGCAGGGACTGTAAAGGCCTGGGACAGCCGTCTGGCGGTAGGAGG 115331
|||| ||||| | || |||||||| | ||||| ||||| |||| | || | ||
Sbjct 698 TGTTAAAAAATTGTCTACATGGACTGTACATCCCTGGAGCAGCCATCTGTCTATAAGTGG 757
Query 115332 AGTTGTACATGATGTCACCCAGGGAGCCCAGCTGAGAGGCCCAGGGATTCACCGTGCTAC 115391
|||||| | | ||||| || || || ||| |||||||| || || | || | |
Sbjct 758 TGTTGTATAACACATCACCAAGAGATCCGGCCTGCGAGGCCCACGGGTTGATTGTATTTC 817
Query 115392 GGTACTCGTAGGCGGCATCCGGGCGGGAGTGGTCATAGATAAGCCCCTCGGCGGCCTCCT 115451
|| || || || | || || |||||||||||| | || ||| || |||||
Sbjct 818 TATATTCATAAGCTGGGTCTGGAATGGAGTGGTCATACAAAAATTTCTCAGCTGCCTCAG 877
Query 115452 GGTTGTAGTTCTCGCAGGAAACTACACAGGCAGCGCGTCCCCTCGGGGAGTTGGACTTTT 115511
| || | | || || || | ||||| || || | ||||| || ||| || ||
Sbjct 878 TGCTGAACGTATCACATGAGATAACACAAGCTGCCCTGCCCCTTGGACTGTTTGAAGATT 937
Query 115512 GAAAATAGGCCACGTCCGCCGTCACCGGGGTAACTATAATCTCACAGGTGGCTTGCTGCC 115571
|||| ||||| || || || || || || || | | ||| |||||||| || |||| |
Sbjct 938 GAAAGTAGGCTACATCAGCTGTTACAGGAGTCAACACAATTTCACAGGTTGCAAGCTGAC 997
Query 115572 CATG 115575
| ||
Sbjct 998 CGTG 1001
>seq394531
Length=2006
Score = 150 bits (166), Expect = 2e-31
Identities = 405/615 (66%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 118405 GTCCAGGAAGAAGGAGTGCTCCAGCAAATGGCGCTTGAACATGGCAATCAGGTCAGACTT 118464
||| || || || ||||| || | ||| || | ||| ||||| | | || |||||| ||
Sbjct 785 GTCGAGAAAAAATGAGTGGTCAACCAAGTGACTCTTAAACATAGAGACCATGTCAGATTT 844
Query 118465 GACAGTCTTGGAGAGCCCCCTCTCAGTGAAGGTGGGATCAGCCA-AGGTCTGCAGGATAA 118523
|| || || | |||||| ||| | || || || | | || ||| || ||||
Sbjct 845 AACTGTTTTTCTTAACCCCCTTTCATCATATGTTGGGTCTGTGAGAGCCCTG-AGAATAA 903
Query 118524 ACATGGGCGGAGCATGGCGCAGCTTCACGCTCAGGACCGTGTTGATGAGGCCCCTCTCCA 118583
||| || || | || | || || || | | || |||| | || |||||||| |
Sbjct 904 ACAATGGGGGTGAGTGTCTCAATTTTACATTTAACACTGTGTCAACAAGACCCCTCTCTA 963
Query 118584 GGGCGTCGACCCCAAACTGGAGGGCAGAGGCCACGGTCTTGACGGCCCCCACGTACTCGG 118643
|| || || |||||||| || || || | | || || || ||||| | |||||| |
Sbjct 964 ATGCATCAACACCAAACTGAAGAGCTGATGTGATTGTTTTCACAGCCCCAATGTACTCTG 1023
Query 118644 CGTACTCGACCGGGGTCTCGGGGATGCTGTGCA--GAATCTCCAGATCCAGCATGGAGAG 118701
| || | || ||||| ||| ||| | ||| |||||||| || | || |
Sbjct 1024 TGATGTCAAGAGGAGTCTCTTT--TGCAGTGTAAAGAAGTTCCAGATCAAGGGTAGACAA 1081
Query 118702 CTCAATTTCCGTACTGATGTGATGTTTGTGGCAATTCTTGACCACGATGAAGGTCCGCTG 118761
|||||| || | ||||| || ||||||| ||| ||| | ||| ||| | |||
Sbjct 1082 CTCAATCTCAGCGCTGATATGGTGTTTGTTGCAGACCTTCATCACTATGTATTGTTTCTG 1141
Query 118762 CTTGCTGGGTCTCCGGCCGTCTCCATGAGCAATGGTGGGGACGGAAATGCGAAATTGAAT 118821
|| || ||| || || |||||||| || || || || || || || ||| || ||
Sbjct 1142 TTTTCTAGGTACGCGTCCATCTCCATGGGCTATTGTTGGCACAGATATTTTAAACTGTAT 1201
Query 118822 CTTGCCATCCGTCATGCGACTCAGGTCTTTGAATTCCGTGTTTACGCAGGACACGGCCAG 118881
|| ||||| ||||| | | || || || ||||| ||||| || || || || ||||
Sbjct 1202 TTTCCCATCTGTCATTCTTTTTAGATCCTTAAATTCAGTGTTGACACAAGAAACTGCCAA 1261
Query 118882 AGCCGTCTCCAGGAATCGAACGTACTGGATGGCGTTGGTGTAGACCCCGAGCAGCACCTC 118941
|| || || | ||| ||| |||||||||||||||| || || || | || |||||
Sbjct 1262 AGAAGTTTCTAAAAATTTAACAAACTGGATGGCGTTGGTATACACACCTAATAGAACCTC 1321
Query 118942 GAACTTGATGCCCGCCTCCCTGGCATCCTTGCCCACAAGCAGATCGAAGCTATGAAACAG 119001
|| | | || || || |||| || || | || || || ||||| | ||| ||
Sbjct 1322 AAATCTAACACCATTTTCTCTCACATCTTTTCCTAGGAGAAGTTCAAAGCTCTTAAAGAG 1381
Query 119002 CCCCTCCGCCGCGGA 119016
|||||| || || ||
Sbjct 1382 CCCCTCTGCTGCAGA 1396
>seq1683812
Length=3291
Score = 136 bits (150), Expect = 4e-27
Identities = 119/148 (80%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || |
Sbjct 2045 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2104
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||||||| || || | ||| || |||||||||||||| ||| ||||| || |
Sbjct 2105 TGCCGCAGGCTGAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAA 2164
Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287
| || |||| || ||||| || ||||
Sbjct 2165 AGCTGAAGAATCTGAGGCTGCGGCTGCG 2192
>seq479572
Length=815
Score = 132 bits (146), Expect = 5e-26
Identities = 308/455 (68%), Gaps = 11/455 (2%)
Strand=Plus/Minus
Query 150208 GTCACGGTCTCGGCGATGGAGAGGCAGGGGAAGAGGCCGTTGGCCACCCCAGTGAAGCCG 150267
||||| ||||| ||||| | || || | ||||| || || || || || ||
Sbjct 489 GTCACAGTCTCTGCGATTTTAACACAAGGAAGTAGGCCTGAAGCAACTCCTGTAAATCCA 430
Query 150268 TAGACGGCGTTGCACGTGCACTTGATGGCCAGCTGCTGCTTGTCCAGGATGGTCTTTTGG 150327
|| || || ||||| || || || ||||| || |||||||| || |||||||| | |
Sbjct 429 TATACTGCATTGCAGGTACATTTTATGGCTAGTTGCTGCTTATCAAGGATGGT-TCTCAT 371
Query 150328 CGC-GGGTCCTCGCAGGCCGCCAGCAGCTTCTTAATGGCCTTGCGCTTGGCCAGCCAGGA 150386
| | ||||| ||| |||||| ||| | |||| || | ||| || |||||
Sbjct 370 CACAGGGTCTGTGCACTGGGCCAGCTCTTTCCTGATGGATTTTCTCTTTGCAAGCCACAC 311
Query 150387 GGTCAGCAGACTGGCCAGGAAGGACTCGTGCACGTGCTTCTTTACAAAGTGGTAGGTGCC 150446
|| | ||| ||||||| || || | |||||||| || ||||| || |||
Sbjct 310 AGTTAACAGTTTGGCCAGTAAAGATACAGATACGTGCTTTTTAACAAAATGAACCAGGCC 251
Query 150447 CCCGGTGAGCCTGAAGGACTCGTAGTCCTC-GCCCGGGCGCAGGCCGGCTAGTCTGT-GC 150504
| | |||| ||| | ||| ||||| || || | | | || | ||| |
Sbjct 250 CGAGCTGAGGTGGAAAGTCTCATAGTCATCTGCACCTAA--ATGTGGGTGAAGGTGTAGA 193
Query 150505 TCCTCTTCCGGCGTTATCATGGTAGAATAACAGAGATTATGAGCCTGAATGATGCTCGGG 150564
| ||| || | | |||| |||||| ||||| || || || ||||| || ||||| |||
Sbjct 192 TTCTCATCGG---TGATCAGGGTAGAGTAACACAGGTTGTGTGCCTGTATAATGCTTGGG 136
Query 150565 TAGAGGCTGGCAAAGTCCACCACCAGCACCGGGGAGTTGTAGAAGCC-GGACAGGGGCTG 150623
||||||||||||||||| || || || || |||| |||||| || || ||| |||||
Sbjct 135 TAGAGGCTGGCAAAGTCTACTACTAGAACGGGGGTGTTGTAAAATCCAGGAAGTGGGCT- 77
Query 150624 GATGACAGTGGCCCCCTGGTAGCCGTCCCTGTCGG 150658
||| |||||||| |||||||| || || ||| ||
Sbjct 76 GATAACAGTGGCGCCCTGGTATCCATCAGTGTTGG 42
>seq1948974
Length=2508
Score = 122 bits (134), Expect = 9e-23
Identities = 257/381 (67%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 110788 TTTCAGAGCATCCGGGGCCAGACATTCCACCTGCTGTTTGTGGACGAGGCCAACTTTATC 110847
|||||||||||| | || || || || |||| |||| | || |||||||| |||||
Sbjct 1027 TTTCAGAGCATCAGAGGACAAACTTTTAACCTCCTGTACATCGATGAGGCCAATTTTATT 1086
Query 110848 AAGAAGGAGGCCCTGCCGGCTATCCTGGGCTTTATGCTTCAGAAGGACGCCAAGATTATC 110907
|||||||| | || || || || ||||| |||||| | || || || || ||| | ||
Sbjct 1087 AAGAAGGACTCTCTTCCTGCAATACTGGGATTTATGTTACAAAAAGATGCTAAGTTGATA 1146
Query 110908 TTCATCTCGTCCGTCAATTCGGCCGATCAGGCCACCAGCTTCCTTTATAAGCTGAAGGAC 110967
|| || || || || || || | || || | |||||||| ||| | | | ||| |
Sbjct 1147 TTTATATCATCTGTTAACTCTTCTGACCAATCAACCAGCTT-CTTGTTCAATTTAAGAAA 1205
Query 110968 GCGCAG-GAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATTT 111026
||| || || | || | ||||||||||| || | || || | | ||||
Sbjct 1206 TGCCAGTGAAAAAATGTTAAATATTGTAAGTTATGTTTGCCCTGACCACAGAGAGCATTT 1265
Query 111027 TGACATGCAGGACAGCATGGTCTCGTGCCCCTGCTTTCGCCTCCACATCCCGTCTTACAT 111086
| |||||||| | || || || ||||||| | || |||||||| | |||||
Sbjct 1266 TAGTTTGCAGGACTCATTAGTTTCATGTCCCTGCTACAGACTTCACATCCCCACATACAT 1325
Query 111087 CACCATGGATAGCAACATCCGAGCGACCACCAACCTCTTTCTGGACGGGGCCTTTAGCAC 111146
||| || ||| | || | || || ||||| || |||| |||||||| | |||
Sbjct 1326 CACTATAGATCAAACAATTAAAAACACAACAAACCTTTTCATGGATGGGGCCTTCAACAC 1385
Query 111147 GGAGCTGATGGGCGACACCTC 111167
|| ||||||||||| ||||
Sbjct 1386 AGAACTGATGGGCGATGCCTC 1406
>seq399366
Length=1397
Score = 100 bits (110), Expect = 3e-16
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
||||||| || ||||| |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 797 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 856
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||| | |||||||| ||||| ||
Sbjct 857 TAGAAACCTACATGACAATGAAGAT 881
>seq394781
Length=1125
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 60463 AGAGGGATCTGGAGTTTTACAAGTTCCTATTCACCTTCCTGGCCATGGCCGAGAAGCTGG 60522
|||||||| ||||| ||| |||| ||||| || || | | ||||| || | || |
Sbjct 301 AGAGGGATAGAGAGTTCTACCAGTTTCTATTTACATTTTTAGGGATGGCTGAAAGTCTAG 360
Query 60523 TGAACTTTAACATTGATGAACTGGTCACCAGCTTTGAGAGCCACGACATAGATCACTACT 60582
| |||||||||||| || |||| | ||||| | || ||||| |||||| |
Sbjct 361 TTAACTTTAACATTAGAGACTTGGTGAAACATTTTGATTGTCATGACATGATTCACTATT 420
Query 60583 ACACGGAGCAGAAGGCTATGGAGAACGTTCACGGGGAGACGTATGCTAACATTCTGAACA 60642
| ||||| | ||| ||||| || |||| |||| | |||||||||||| ||||| |
Sbjct 421 ATGATGAGCAAATGGCCATGGAAAATATTCATGGGGTGGTGTATGCTAACATCCTGAATA 480
Query 60643 TGCTGTTT 60650
|| | |||
Sbjct 481 TGTTTTTT 488
>seq17494
Length=220
Score = 82.4 bits (90), Expect = 8e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 10301 TTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGCCTTCAGCAAG 10360
||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 220 TTTCTTCCCTGTGAAAATAAGAGCAAGGCAGTGGAGCAGGTGAAGAATGCCTTCAGTAAG 161
Query 10361 CTG 10363
||
Sbjct 160 GTG 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 525269835676800
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