Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1817971 165 1e-35 seq1566104 131 2e-25 seq1995885 107 3e-18 >seq1817971 Length=1863 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || || ||| |||||||||||| || |||| || |||||||||||| Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||| | |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | ||| | ||| || || | || || |||| ||| | Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| ||||||| ||| || ||||| |||| Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 1389 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 298 >seq1566104 Length=2510 Score = 131 bits (144), Expect = 2e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 8731 AGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTA 8790 ||| || ||||||| || ||| |||| || || || || ||||| || |||||||| Sbjct 753 AGTGGCCGTCTTGACAATGTTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTA 812 Query 8791 ACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTC 8850 | || || |||||| ||| | | ||| |||||||||||||| |||||||| | ||| Sbjct 813 CTCTGGAGAACAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTC 872 Query 8851 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8910 | || ||||| || ||||||||||| || || |||||| | | | || | | | Sbjct 873 TATCATACTCTCCCCAAAGATGGCGTTTGGTAGGCACTTTTCAAGAAGCAGCCCTGGGAA 932 Query 8911 CAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTC 8970 ||||||| || ||||||||||| || || || || || || || || ||||| || Sbjct 933 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTC 992 Query 8971 TCCTG 8975 ||||| Sbjct 993 TCCTG 997 >seq1995885 Length=2464 Score = 107 bits (118), Expect = 3e-18 Identities = 210/300 (70%), Gaps = 14/300 (5%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | ||||| |||||||| ||||| ||||| || | |||||||| || || | Sbjct 377 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCC 318 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAAT-GTAGTCATACTTTGTTTTATCAATC 9438 | | ||| || ||||| || | || ||| || || || || | | || || |||| Sbjct 317 AGTAATATAGAGTTGTTATAGAGAAACTGTTGATAGTTGT-ATTCCTGGTCTT--CAATT 261 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | ||||||| || | |||||||||||||| | |||| ||||| | | ||| Sbjct 260 TGAAAGGTGTCCGGCAGAAGGGGATGCCAGTGATACAGCGTGTTGAACTCAGCAGCAATA 201 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || |||||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 200 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 142 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCC 9614 ||| ||||| || | ||||| ||||| || || |||| ||| || || || ||||| Sbjct 141 GTGATAGCCACTCAAGTGCTGTACATAGTCTTCGATCAC---AATCTTAATAGTCTCCCC 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679906553389200