Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1817971 165 1e-35
seq1566104 131 2e-25
seq1995885 107 3e-18
>seq1817971
Length=1863
Score = 165 bits (182), Expect = 1e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| || | || || ||| |||||||||||| || |||| || ||||||||||||
Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||| | |||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | ||| | ||| || || | || || |||| ||| |
Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| ||||||| ||| || ||||| ||||
Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 1389
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || || || || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| |||| | || | |||||| |||||||||||
Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 298
>seq1566104
Length=2510
Score = 131 bits (144), Expect = 2e-25
Identities = 176/245 (72%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 8731 AGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTA 8790
||| || ||||||| || ||| |||| || || || || ||||| || ||||||||
Sbjct 753 AGTGGCCGTCTTGACAATGTTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTA 812
Query 8791 ACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTC 8850
| || || |||||| ||| | | ||| |||||||||||||| |||||||| | |||
Sbjct 813 CTCTGGAGAACAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTC 872
Query 8851 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8910
| || ||||| || ||||||||||| || || |||||| | | | || | | |
Sbjct 873 TATCATACTCTCCCCAAAGATGGCGTTTGGTAGGCACTTTTCAAGAAGCAGCCCTGGGAA 932
Query 8911 CAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTC 8970
||||||| || ||||||||||| || || || || || || || || ||||| ||
Sbjct 933 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTC 992
Query 8971 TCCTG 8975
|||||
Sbjct 993 TCCTG 997
>seq1995885
Length=2464
Score = 107 bits (118), Expect = 3e-18
Identities = 210/300 (70%), Gaps = 14/300 (5%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | ||||| |||||||| ||||| ||||| || | |||||||| || || |
Sbjct 377 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCC 318
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAAT-GTAGTCATACTTTGTTTTATCAATC 9438
| | ||| || ||||| || | || ||| || || || || | | || || ||||
Sbjct 317 AGTAATATAGAGTTGTTATAGAGAAACTGTTGATAGTTGT-ATTCCTGGTCTT--CAATT 261
Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498
| ||| | ||||||| || | |||||||||||||| | |||| ||||| | | |||
Sbjct 260 TGAAAGGTGTCCGGCAGAAGGGGATGCCAGTGATACAGCGTGTTGAACTCAGCAGCAATA 201
Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557
|| |||||||||||||| | | ||| ||||| || || | |||| || | ||
Sbjct 200 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 142
Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCC 9614
||| ||||| || | ||||| ||||| || || |||| ||| || || || |||||
Sbjct 141 GTGATAGCCACTCAAGTGCTGTACATAGTCTTCGATCAC---AATCTTAATAGTCTCCCC 85
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 679906553389200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |