Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1627958 134 1e-26 seq2447078 98.7 9e-16 seq2357151 96.9 3e-15 seq1537392 95.1 1e-14 seq2031399 93.3 4e-14 seq2677557 87.8 2e-12 >seq1627958 Length=3316 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| || || | ||| |||||||||| || || || || | | ||| || Sbjct 327 TTAGACACCTCCCCTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTA 268 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| ||| ||||||| || || |||||||| Sbjct 267 GTCAGACACGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATC 208 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || ||||| ||||| | || ||||||||||| | | |||||| | | Sbjct 207 AGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGG 148 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||| ||||||| || ||||| || || ||||||||||||||||| Sbjct 147 CTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2447078 Length=448 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || || |||||||| || || || ||||| ||||| | || ||||||||||| Sbjct 448 AAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 389 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| |||||| | | ||||| |||| |||||||| || || || | |||||| Sbjct 388 TTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTTTTC 329 Query 94994 ACAAAGATCTGCAT 95007 |||||||||||||| Sbjct 328 ACAAAGATCTGCAT 315 >seq2357151 Length=385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | ||| ||||||| ||||| || ||||| ||||| | || |||||||||| Sbjct 8 CAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGA 67 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | |||||| | | ||||| |||| ||||||| || ||||| || || | Sbjct 68 CATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCT 127 Query 94992 TCACAAAGATCTGCAT 95007 |||||||||||||||| Sbjct 128 TCACAAAGATCTGCAT 143 >seq1537392 Length=19804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860 |||||||| || || || || || | ||| || || || |||| ||| | || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || ||||||| || || |||||||| ||| | || ||||| ||||| | || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 ||| || |||| | | |||||| | | || || || | |||||||| || || Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||||||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2031399 Length=344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || |||||||| | ||| || || || ||| Sbjct 237 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 178 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || |||| || | |||||||||||| |||||||| ||||| || Sbjct 177 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 118 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | ||||| || | ||||| Sbjct 117 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 58 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| ||||| || || |||||||| Sbjct 57 AGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 >seq2677557 Length=202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 94843 AGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAAT 94902 ||||| | |||||||||| |||| || |||| || | | ||||| || || ||| | Sbjct 25 AGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACACTGCTGGTCGGGGGGA-T 83 Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 || || ||||| | ||||| || |||||| ||| |||||| | | || || || Sbjct 84 GCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTC 143 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 144 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430639880777660