Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1627958 134 1e-26
seq2447078 98.7 9e-16
seq2357151 96.9 3e-15
seq1537392 95.1 1e-14
seq2031399 93.3 4e-14
seq2677557 87.8 2e-12
>seq1627958
Length=3316
Score = 134 bits (148), Expect = 1e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
||| || ||||| || || | ||| |||||||||| || || || || | | ||| ||
Sbjct 327 TTAGACACCTCCCCTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTA 268
Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893
|| || ||| ||| ||||||||||| ||| ||||||| || || ||||||||
Sbjct 267 GTCAGACACGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATC 208
Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953
|| || || ||||| ||||| | || ||||||||||| | | |||||| | |
Sbjct 207 AGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGG 148
Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| |||| ||||||| || ||||| || || |||||||||||||||||
Sbjct 147 CTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94
>seq2447078
Length=448
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| || || |||||||| || || || ||||| ||||| | || |||||||||||
Sbjct 448 AAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 389
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| |||||| | | ||||| |||| |||||||| || || || | ||||||
Sbjct 388 TTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTTTTC 329
Query 94994 ACAAAGATCTGCAT 95007
||||||||||||||
Sbjct 328 ACAAAGATCTGCAT 315
>seq2357151
Length=385
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| | ||| ||||||| ||||| || ||||| ||||| | || ||||||||||
Sbjct 8 CAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGA 67
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | |||||| | | ||||| |||| ||||||| || ||||| || || |
Sbjct 68 CATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCT 127
Query 94992 TCACAAAGATCTGCAT 95007
||||||||||||||||
Sbjct 128 TCACAAAGATCTGCAT 143
>seq1537392
Length=19804
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860
|||||||| || || || || || | ||| || || || |||| ||| | ||
Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007
Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920
|||||| || ||||||| || || |||||||| ||| | || ||||| ||||| | ||
Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947
Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980
||| || |||| | | |||||| | | || || || | |||||||| || ||
Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887
Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || |||||||||||||||||
Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860
>seq2031399
Length=344
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | ||| || |||||||| | ||| || || || |||
Sbjct 237 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 178
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || || || |||| || | |||||||||||| |||||||| ||||| ||
Sbjct 177 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 118
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | || || | | | ||||| || | |||||
Sbjct 117 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 58
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||| ||||| || || ||||||||
Sbjct 57 AGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22
>seq2677557
Length=202
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 94843 AGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAAT 94902
||||| | |||||||||| |||| || |||| || | | ||||| || || ||| |
Sbjct 25 AGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACACTGCTGGTCGGGGGGA-T 83
Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962
|| || ||||| | ||||| || |||||| ||| |||||| | | || || ||
Sbjct 84 GCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTC 143
Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||||||| || ||||| || || ||||| |||||||||||
Sbjct 144 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430639880777660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |