Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1649980 167 4e-37
seq1613020 165 1e-36
seq1666425 154 2e-33
seq1518867 154 2e-33
seq1535032 138 2e-28
seq743996 136 6e-28
seq3006458 122 1e-23
seq99999 87.8 3e-13
seq97155 82.4 1e-11
>seq1649980
Length=2486
Score = 167 bits (184), Expect = 4e-37
Identities = 204/275 (74%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| || || || |||||||||||||| || || |||||||| |||||
Sbjct 418 GCTAAGCGTCATCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCTAT 476
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || ||||| || |||||||| || || | ||||| | | ||||| ||||
Sbjct 477 CCGGCGCCTTGCTCGACGAGGTGGAGTTAAACGCATTTCTGGTCTTATATATGAGGAGAC 536
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | || | ||| || |||| |||||| || || |||||
Sbjct 537 GCGTGGCGTTCTGAAGGTTTTTTTGGAGAATGTCATCCGCGATGCTGTCACTTACACCGA 596
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| || || |||||||| | || || || | ||||| || ||
Sbjct 597 GCACGCCAAGCGCAAGACGGTGACAGCCATGGATGTGGTGTACGCGCTTAAACGACAGGG 656
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTC 16704
|| | | ||||||||||| ||||| |||||
Sbjct 657 GCGCACTCTCTATGGTTTTGGCGGTTAAAGTCTTC 691
>seq1613020
Length=12322
Score = 165 bits (182), Expect = 1e-36
Identities = 193/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||| | | || || ||||| ||||| || ||||||||||| || |||
Sbjct 5846 GCTAAGCGCCATCGTAAAGTGCTCCGTGATAATATCCAGGGCATCACCAAGCCCGCGATC 5905
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||| || || ||||| |||||||| | || || | | |||||||||| |
Sbjct 5906 CGGCGTTTGGCCCGGCGCGGTGGTGTCAAGCGCATTTCCGGTCTCATTTATGAAGAGACT 5965
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | ||| | || || ||| |||||| | ||||| || ||| ||||||
Sbjct 5966 CGCGGTGTGCTTAAGGTGTTTCTAGAGAACGTTATTCGAGATGCCGTCACCTACACCGAG 6025
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||||||| |||||||| || | |||||| | || |||||| | |||||||| ||
Sbjct 6026 CATGCTAAACGCAAGACTGTTACTGCTATGGATGTGGTTTATGCACTAAAACGTCAGGGG 6085
Query 16673 CGTAAGATTTATGGTTTTGGA 16693
|| | |||| || || |||
Sbjct 6086 CGCACCCTTTACGGCTTCGGA 6106
>seq1666425
Length=8156
Score = 154 bits (170), Expect = 2e-33
Identities = 195/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| ||||| |||| | | | ||||| |||||||| || ||||||||||| |||||
Sbjct 1016 CGCTAAACGTCACCGCAAAGTTTTGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1075
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||||| ||||| || || || |||||||| |||| || | | || || ||||
Sbjct 1076 TCGGCGTCTTGCTCGGCGAGGAGGTGTCAAGCGGATCTCCGGCCTTATTTACGAGGAGAC 1135
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| ||||| | ||||| ||| ||| |||| ||||| || ||||| ||
Sbjct 1136 TCGGGGTGTGTTGAAAGTGTTCCTGGAGAACGTCATCCGCGATGCAGTCACTTATACGGA 1195
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| |||||||| | || || || | || || || ||
Sbjct 1196 GCACGCCAAGCGCAAGACCGTCACTGCCATGGATGTAGTGTACGCTCTTAAGCGCCAGGG 1255
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||| || ||| | |||
Sbjct 1256 ACGCACCCTGTATGGCTTCGGAGGCTAA 1283
>seq1518867
Length=11885
Score = 154 bits (170), Expect = 2e-33
Identities = 190/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | ||| || || || ||||| |||||||||||||| |||||
Sbjct 5588 GCTAAACGTCATCGTAAGGTTCTGCGCGACAATATCCAGGGAATCACCAAGCCTGCTATT 5647
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| ||||| || ||||||||| | || || | ||||||| |||| |
Sbjct 5648 CGGCGTCTTGCTCGGCGTGGCGGTGTCAAGCGTATTTCAGGTCTTATCTATGAGGAGACT 5707
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | ||| | ||||| ||| || |||| ||||||| || || || ||
Sbjct 5708 CGTGGGGTCCTCAAGGTTTTCCTGGAGAATGTGATCCGTGATGCTGTCACTTACACTGAA 5767
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || || |||||||| ||| |||||||| | || || || | || ||||| ||
Sbjct 5768 CATGCAAAGCGCAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTCAAGCGTCAGGGG 5827
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | || ||||| ||
Sbjct 5828 CGCACTCTCTACGGTTTCGG 5847
>seq1535032
Length=6231
Score = 138 bits (152), Expect = 2e-28
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | | | | || || || ||||| || || |||||||| |||||
Sbjct 5017 CGCCAAGCGTCACCGTAAAGTTTTGCGCGACAATATCCAGGGTATTACCAAGCCTGCTAT 5076
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| || || |||||||| || || ||||| | || || | |||| || || |
Sbjct 5077 CCGTCGCCTAGCCCGTCGTGGAGGCGTTAAGCGCATTTCCGGGCTCATCTACGAGGAAAC 5136
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| | ||| | || || ||| || |||| || || || ||| || ||
Sbjct 5137 TCGCGGAGTTCTTAAGGTTTTTCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGA 5196
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| ||||| |||||||| ||| ||||||| | || || || | || || || ||
Sbjct 5197 ACACGCCAAACGCAAGACTGTAACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 5256
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||||| |||||||||||||
Sbjct 5257 CCGTACCCTTTATGGTTTTGG 5277
>seq743996
Length=348
Score = 136 bits (150), Expect = 6e-28
Identities = 192/270 (71%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| || || || |||||||| || |||||||| || || |||
Sbjct 75 GCCAAGCGACACCGCAAGGTGCTACGTGACAACATCCAGGGCATCACCAAACCTGCAATC 134
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| |||||||| || || || || |||||||| | ||||| | |||| || |||| |
Sbjct 135 CGGCGTCTGGCCCGGCGCGGAGGCGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACT 194
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | || | ||| || |||| ||||| || || ||||||
Sbjct 195 CGTGGAGTCCTGAAGGTGTTTTTGGAGAATGTCATCCGCGATGCCGTCACTTACACCGAG 254
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || |||||||| || || | ||||| | ||||| || | || || || ||
Sbjct 255 CACGCCAAGCGTAAGACGGTAACGGCTATGGACGTGGTCTACGCGCTTAAGCGACAGGGG 314
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | ||||||||||||| |||| |||
Sbjct 315 CGCACTCTTTATGGTTTTGGCGGTTAGTCT 344
>seq3006458
Length=206
Score = 122 bits (134), Expect = 1e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || ||||| || || || || || || |||||
Sbjct 206 GACAACATCCAGGGTATCACCAAGCCCGCAATCCGGCGCCTAGCCCGCCGAGGCGGAGTG 147
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| |||| || | |||| || |||| ||| | || | ||| | ||||| ||
Sbjct 146 AAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTGTTCCTGGAG 87
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| |||| || ||| | ||||| |||||||| || || ||||| |||||| ||
Sbjct 86 AACGTGATCCGCGACGCTGTTACTTATACGGAGCACGCCAAGCGGAAGACGGTCACCGCC 27
Query 16640 ATGGATATCGTCTATGC 16656
||||| | ||||||||
Sbjct 26 ATGGACGTGGTCTATGC 10
>seq99999
Length=246
Score = 87.8 bits (96), Expect = 3e-13
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | || || |||| ||||| || || ||||||||||| || |
Sbjct 144 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 86
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| ||||| ||||| || || ||||| ||||||| | | || || ||||
Sbjct 85 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 26
Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575
|| | ||| ||||| | |||||
Sbjct 25 CCCGCGGTGTGCTGAAGGTGTTCCT 1
>seq97155
Length=206
Score = 82.4 bits (90), Expect = 1e-11
Identities = 97/129 (75%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| || || | | |||| || || || ||||| || |||||||| || || ||
Sbjct 79 GCTAAGCGCCACCGTA-AGGTCTTGCGTGACAATATCCAGGGTATCACCAAACCTGCAAT 137
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| | ||||| |||||||| || ||||| | || || | ||||||||||||
Sbjct 138 TCGTCGTTTAGCTCGCCGTGGTGGTGTTAAGCGCATTTCCGGCCTCATCTATGAAGAGAC 197
Query 16552 TCGTGATGT 16560
||| | |||
Sbjct 198 TCGGGGTGT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 76120795219365
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