Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1649980 167 4e-37 seq1613020 165 1e-36 seq1666425 154 2e-33 seq1518867 154 2e-33 seq1535032 138 2e-28 seq743996 136 6e-28 seq3006458 122 1e-23 seq99999 87.8 3e-13 seq97155 82.4 1e-11 >seq1649980 Length=2486 Score = 167 bits (184), Expect = 4e-37 Identities = 204/275 (74%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| || || || |||||||||||||| || || |||||||| ||||| Sbjct 418 GCTAAGCGTCATCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCTAT 476 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || |||||||| || || | ||||| | | ||||| |||| Sbjct 477 CCGGCGCCTTGCTCGACGAGGTGGAGTTAAACGCATTTCTGGTCTTATATATGAGGAGAC 536 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | || | ||| || |||| |||||| || || ||||| Sbjct 537 GCGTGGCGTTCTGAAGGTTTTTTTGGAGAATGTCATCCGCGATGCTGTCACTTACACCGA 596 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || |||||||| | || || || | ||||| || || Sbjct 597 GCACGCCAAGCGCAAGACGGTGACAGCCATGGATGTGGTGTACGCGCTTAAACGACAGGG 656 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTC 16704 || | | ||||||||||| ||||| ||||| Sbjct 657 GCGCACTCTCTATGGTTTTGGCGGTTAAAGTCTTC 691 >seq1613020 Length=12322 Score = 165 bits (182), Expect = 1e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | || || ||||| ||||| || ||||||||||| || ||| Sbjct 5846 GCTAAGCGCCATCGTAAAGTGCTCCGTGATAATATCCAGGGCATCACCAAGCCCGCGATC 5905 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || || ||||| |||||||| | || || | | |||||||||| | Sbjct 5906 CGGCGTTTGGCCCGGCGCGGTGGTGTCAAGCGCATTTCCGGTCTCATTTATGAAGAGACT 5965 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | || || ||| |||||| | ||||| || ||| |||||| Sbjct 5966 CGCGGTGTGCTTAAGGTGTTTCTAGAGAACGTTATTCGAGATGCCGTCACCTACACCGAG 6025 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| |||||||| || | |||||| | || |||||| | |||||||| || Sbjct 6026 CATGCTAAACGCAAGACTGTTACTGCTATGGATGTGGTTTATGCACTAAAACGTCAGGGG 6085 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | |||| || || ||| Sbjct 6086 CGCACCCTTTACGGCTTCGGA 6106 >seq1666425 Length=8156 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| |||| | | | ||||| |||||||| || ||||||||||| ||||| Sbjct 1016 CGCTAAACGTCACCGCAAAGTTTTGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1075 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| || || || |||||||| |||| || | | || || |||| Sbjct 1076 TCGGCGTCTTGCTCGGCGAGGAGGTGTCAAGCGGATCTCCGGCCTTATTTACGAGGAGAC 1135 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| |||| ||||| || ||||| || Sbjct 1136 TCGGGGTGTGTTGAAAGTGTTCCTGGAGAACGTCATCCGCGATGCAGTCACTTATACGGA 1195 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || || || | || || || || Sbjct 1196 GCACGCCAAGCGCAAGACCGTCACTGCCATGGATGTAGTGTACGCTCTTAAGCGCCAGGG 1255 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || ||| | ||| Sbjct 1256 ACGCACCCTGTATGGCTTCGGAGGCTAA 1283 >seq1518867 Length=11885 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | ||| || || || ||||| |||||||||||||| ||||| Sbjct 5588 GCTAAACGTCATCGTAAGGTTCTGCGCGACAATATCCAGGGAATCACCAAGCCTGCTATT 5647 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| ||||| || ||||||||| | || || | ||||||| |||| | Sbjct 5648 CGGCGTCTTGCTCGGCGTGGCGGTGTCAAGCGTATTTCAGGTCTTATCTATGAGGAGACT 5707 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| || |||| ||||||| || || || || Sbjct 5708 CGTGGGGTCCTCAAGGTTTTCCTGGAGAATGTGATCCGTGATGCTGTCACTTACACTGAA 5767 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || |||||||| ||| |||||||| | || || || | || ||||| || Sbjct 5768 CATGCAAAGCGCAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTCAAGCGTCAGGGG 5827 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 5828 CGCACTCTCTACGGTTTCGG 5847 >seq1535032 Length=6231 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | | || || || ||||| || || |||||||| ||||| Sbjct 5017 CGCCAAGCGTCACCGTAAAGTTTTGCGCGACAATATCCAGGGTATTACCAAGCCTGCTAT 5076 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || |||||||| || || ||||| | || || | |||| || || | Sbjct 5077 CCGTCGCCTAGCCCGTCGTGGAGGCGTTAAGCGCATTTCCGGGCTCATCTACGAGGAAAC 5136 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | || || ||| || |||| || || || ||| || || Sbjct 5137 TCGCGGAGTTCTTAAGGTTTTTCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGA 5196 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| |||||||| ||| ||||||| | || || || | || || || || Sbjct 5197 ACACGCCAAACGCAAGACTGTAACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 5256 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||||||||| Sbjct 5257 CCGTACCCTTTATGGTTTTGG 5277 >seq743996 Length=348 Score = 136 bits (150), Expect = 6e-28 Identities = 192/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || |||||||| || || ||| Sbjct 75 GCCAAGCGACACCGCAAGGTGCTACGTGACAACATCCAGGGCATCACCAAACCTGCAATC 134 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| || || || || |||||||| | ||||| | |||| || |||| | Sbjct 135 CGGCGTCTGGCCCGGCGCGGAGGCGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACT 194 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || |||| ||||| || || |||||| Sbjct 195 CGTGGAGTCCTGAAGGTGTTTTTGGAGAATGTCATCCGCGATGCCGTCACTTACACCGAG 254 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| || || | ||||| | ||||| || | || || || || Sbjct 255 CACGCCAAGCGTAAGACGGTAACGGCTATGGACGTGGTCTACGCGCTTAAGCGACAGGGG 314 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | ||||||||||||| |||| ||| Sbjct 315 CGCACTCTTTATGGTTTTGGCGGTTAGTCT 344 >seq3006458 Length=206 Score = 122 bits (134), Expect = 1e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| || || || || || || ||||| Sbjct 206 GACAACATCCAGGGTATCACCAAGCCCGCAATCCGGCGCCTAGCCCGCCGAGGCGGAGTG 147 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | |||| || |||| ||| | || | ||| | ||||| || Sbjct 146 AAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTGTTCCTGGAG 87 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || ||| | ||||| |||||||| || || ||||| |||||| || Sbjct 86 AACGTGATCCGCGACGCTGTTACTTATACGGAGCACGCCAAGCGGAAGACGGTCACCGCC 27 Query 16640 ATGGATATCGTCTATGC 16656 ||||| | |||||||| Sbjct 26 ATGGACGTGGTCTATGC 10 >seq99999 Length=246 Score = 87.8 bits (96), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 144 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 86 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 85 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 26 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| ||||| | ||||| Sbjct 25 CCCGCGGTGTGCTGAAGGTGTTCCT 1 >seq97155 Length=206 Score = 82.4 bits (90), Expect = 1e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | |||| || || || ||||| || |||||||| || || || Sbjct 79 GCTAAGCGCCACCGTA-AGGTCTTGCGTGACAATATCCAGGGTATCACCAAACCTGCAAT 137 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||||| |||||||| || ||||| | || || | |||||||||||| Sbjct 138 TCGTCGTTTAGCTCGCCGTGGTGGTGTTAAGCGCATTTCCGGCCTCATCTATGAAGAGAC 197 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 198 TCGGGGTGT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 76120795219365