Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 143 3e-29
seq1769580 93.3 4e-14
seq1567936 84.2 2e-11
>seq1557410
Length=8730
Score = 143 bits (158), Expect = 3e-29
Identities = 363/543 (67%), Gaps = 7/543 (1%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||| | || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||| | | | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| |||||||||||||| | || | || | |||||||||| |
Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTC-CAG 6655
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA-TTCATACCGA 21359
||| ||| ||||| ||||| || | || || |||||| ||| ||||| | |
Sbjct 6656 CCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAA 6715
Query 21360 TCAATTTTA-CAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418
|| | ||| ||| || | || | ||| | |||||| || || | |
Sbjct 6716 AGTGCTTCACCAGCAAG-GCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTA 6774
Query 21419 ATTATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477
||||| | | ||| || | | || | || | | | ||||| ||||||| ||
Sbjct 6775 ATTATTTCTTTTACTCTCTGCTCTAAT-GGTTTGTGTACCAGGTGTTTGAACATCAGGCA 6833
Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537
||||| |||||| | ||||| ||||| || || | | ||||| |||||||| | ||
Sbjct 6834 GGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCC 6893
Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597
||||| | ||||| || |||| ||| ||||| || ||||| || |||||||| ||
Sbjct 6894 AGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGAT 6953
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657
||| || || || ||||| || || | |||| ||||| |||| ||||| ||| ||
Sbjct 6954 GCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAAT 7013
Query 21658 CCA 21660
|||
Sbjct 7014 CCA 7016
>seq1769580
Length=2278
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 1476 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1417
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||| ||||||| ||| |||
Sbjct 1416 ATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 1357
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| ||||||||||||||
Sbjct 1356 TTCTCCATAAAGTCAAATGGATTTTC 1331
>seq1567936
Length=13010
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724
||||||| | | |||| | ||| | || || | ||| || || | | |||||||||
Sbjct 9125 GTTTCAAACTGAGCAAGGTTGGCTTCTAAAGAGGCACAGAAGGTTTGACTGAATGTCCAA 9066
Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784
|| ||| ||||||||||| ||||| |||||| ||||||||| ||||| | ||||||
Sbjct 9065 TTCCTTGTGTCTTCAGAAAAATAAAAACATTTACTTCCAAATCCGATCCAGCTTTTTGGG 9006
Query 130785 CAAGTAACATA 130795
|| | | ||||
Sbjct 9005 CAGGCAGCATA 8995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510416628568200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |