Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1557410 143 3e-29 seq1769580 93.3 4e-14 seq1567936 84.2 2e-11 >seq1557410 Length=8730 Score = 143 bits (158), Expect = 3e-29 Identities = 363/543 (67%), Gaps = 7/543 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||| | || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||| | | | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||||||||| | || | || | |||||||||| | Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTC-CAG 6655 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA-TTCATACCGA 21359 ||| ||| ||||| ||||| || | || || |||||| ||| ||||| | | Sbjct 6656 CCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAA 6715 Query 21360 TCAATTTTA-CAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418 || | ||| ||| || | || | ||| | |||||| || || | | Sbjct 6716 AGTGCTTCACCAGCAAG-GCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTA 6774 Query 21419 ATTATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 ||||| | | ||| || | | || | || | | | ||||| ||||||| || Sbjct 6775 ATTATTTCTTTTACTCTCTGCTCTAAT-GGTTTGTGTACCAGGTGTTTGAACATCAGGCA 6833 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| |||||| | ||||| ||||| || || | | ||||| |||||||| | || Sbjct 6834 GGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCC 6893 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||||| || |||| ||| ||||| || ||||| || |||||||| || Sbjct 6894 AGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGAT 6953 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||| || || || ||||| || || | |||| ||||| |||| ||||| ||| || Sbjct 6954 GCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAAT 7013 Query 21658 CCA 21660 ||| Sbjct 7014 CCA 7016 >seq1769580 Length=2278 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 1476 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1417 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| Sbjct 1416 ATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 1357 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 1356 TTCTCCATAAAGTCAAATGGATTTTC 1331 >seq1567936 Length=13010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| | ||| | || || | ||| || || | | ||||||||| Sbjct 9125 GTTTCAAACTGAGCAAGGTTGGCTTCTAAAGAGGCACAGAAGGTTTGACTGAATGTCCAA 9066 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||||||||| ||||| |||||| ||||||||| ||||| | |||||| Sbjct 9065 TTCCTTGTGTCTTCAGAAAAATAAAAACATTTACTTCCAAATCCGATCCAGCTTTTTGGG 9006 Query 130785 CAAGTAACATA 130795 || | | |||| Sbjct 9005 CAGGCAGCATA 8995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510416628568200