Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1557410 280 2e-70 seq1615235 123 3e-23 seq1725941 114 2e-20 seq1599774 113 5e-20 seq1700391 111 2e-19 seq2307158 89.7 6e-13 >seq1557410 Length=8730 Score = 280 bits (310), Expect = 2e-70 Identities = 633/942 (67%), Gaps = 21/942 (2%) Strand=Plus/Plus Query 32954 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCC 33009 ||| |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 33010 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33069 || | || ||| || || | || || || || || || |||||||||| ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 33070 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 33129 || ||||| || ||||| ||||| || ||| || | || |||| ||| Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC 6656 Query 33130 ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT-CATTCCTAT 33188 | | ||| || || || || || | || | ||| | ||||| ||| | | Sbjct 6657 CTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAA 6716 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 | || || | | ||| |||| ||||| || ||||| || || |||| | || Sbjct 6717 GTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAAT 6776 Query 33249 AATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAACAT 33306 || | | || | ||| | || ||| || | | ||||| ||||||| || Sbjct 6777 TATTTCTTTTAC--TCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAG 6834 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || || || | | |||||| ||||| ||| | ||||| | |||||| ||||| || Sbjct 6835 GCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCA 6894 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || || | || || ||||| ||||| || || || | |||||||||||||| Sbjct 6895 GGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATG 6954 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATC 33483 ||||| ||||| |||||||| | || ||||| || | | | |||| ||| Sbjct 6955 CCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATC 7014 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || | |||||| |||||| | | ||||||||||||||||| |||||||| ||| Sbjct 7015 CAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAG 7074 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 ||| | | |||| ||| |||||||| ||||| || || |||||||||||||| | Sbjct 7075 AGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTA 7134 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 ||||| ||||||| |||| || || || || |||||||| ||| || |||| Sbjct 7135 GAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA-GTAGGCT------TCTGA 7187 Query 33664 ACTTC-TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 ||||| || |||||| | || |||| || ||||| ||| | | |||||| |||||||| Sbjct 7188 ACTTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAA 7246 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33782 || |||| ||| | ||| |||| | | | || || | | | ||| | | Sbjct 7247 GAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTA 7306 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 || || || || | ||| || || ||| | |||||||| || | ||| || || ||||| Sbjct 7307 AATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATA 7366 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||| ||| || |||| |||| || ||||| || ||||| Sbjct 7367 CATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 33446 C 33446 | Sbjct 2993 C 2993 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | ||| || |||||||| |||||| | ||||| || Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTCTC 1254 Query 33684 CGCC 33687 | || Sbjct 1253 CACC 1250 >seq1725941 Length=6718 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 3163 AGGCTCCAGGTAGATAGC 3180 >seq1599774 Length=14829 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 6483 CTGTTTCTTATACCATA 6467 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819 >seq1700391 Length=5054 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3357 >seq2307158 Length=1450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| | ||| | || | || || ||||| || | ||||||||||| || |||||| Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || | |||||||| || || || || ||||| || | || || || || ||||| Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 ||||| | || | ||| ||||| ||||| ||||||||| Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597785544973800