Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1725941 105 2e-17 seq1615235 96.9 9e-15 seq1599774 86.0 2e-11 >seq1725941 Length=6718 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||||||||| || || ||| Sbjct 1805 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGAACCCCATACATG 1746 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 1745 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 1686 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | ||||| ||| Sbjct 1685 AGCAACCTGTGCACAGAAATAGTAGAATATACC 1653 >seq1615235 Length=3244 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || |||||||| ||||||||||| | ||| || Sbjct 2981 GAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCA 3040 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 3041 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 3100 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 3101 AGCAGAGATGAGG 3113 >seq1599774 Length=14829 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 ||| ||| |||| | |||| || || ||||||| |||| ||||| ||||||||||| | Sbjct 8804 AGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTATGGGAAATCT 8863 Query 365012 CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | | |||| | | | ||||| ||||| | |||||||| || ||| ||||||| Sbjct 8864 CTCAGAAAACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATTGATCAAAGCCAGT 8923 Query 365072 CGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | || ||| | || || |||| | || | ||| || || ||||| ||||||| Sbjct 8924 CTTTGAACATCCATATTGCTGAGCCTAACTATGGCAAACTCACTAGTATGCACTTCTACG 8983 Query 365132 GGTGGAA 365138 | ||||| Sbjct 8984 GCTGGAA 8990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1249393333380510