Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2447078 86.0 5e-12 seq2031399 82.4 6e-11 >seq2447078 Length=448 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || || || | || ||| | || |||||| ||| Sbjct 314 AATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 373 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| |||||||| || || ||||| Sbjct 374 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCA 433 Query 24110 ACAGAGACTGAT 24121 ||||| |||| Sbjct 434 GCAGAGGTTGAT 445 >seq2031399 Length=344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || |||||||| | || || || | || || |||| ||||| | Sbjct 18 CAAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACC 77 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 78 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 137 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||||| | ||||||||||| ||||||| | | | || || Sbjct 138 TCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 197 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||||||||| || || || ||||| | ||||| ||| Sbjct 198 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413004462652275