Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2201104 127 1e-24
seq2193122 127 1e-24
seq2106077 127 1e-24
seq2031399 111 1e-19
seq1599480 89.7 3e-13
seq368065 89.7 3e-13
seq1731777 84.2 1e-11
>seq2201104
Length=234
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 224 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 164 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 130
>seq2193122
Length=261
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGCGGGAATCTCGT 137
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 136 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 102
>seq2106077
Length=234
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 224 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 164 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 130
>seq2031399
Length=344
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 175
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| ||||| | || | ||||| || ||
Sbjct 174 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| ||| || || | || |||||
Sbjct 114 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 55
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || | |||||| ||||| |||||||| ||
Sbjct 54 CTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19
>seq1599480
Length=5503
Score = 89.7 bits (98), Expect = 3e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009
||||||||||||||||||||||||||||| | |||||||||| ||||| |||| | | |
Sbjct 3896 TCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTTGTGCT 3955
Query 20010 AATATTTAGCCTTA 20023
||||||||||||
Sbjct 3956 GGTATTTAGCCTTA 3969
>seq368065
Length=1064
Score = 89.7 bits (98), Expect = 3e-13
Identities = 79/98 (81%), Gaps = 8/98 (8%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA----GTAGATAGGG----GGTAATCT 25953
||||||||||||||||||||||||| ||| ||| |||| |||| || ||||
Sbjct 697 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATCTTTTGTAGGTAGGACAGTGGGAATCG 638
Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||| ||||||||| ||||||||||||||||||
Sbjct 637 CGTTCTTCCATTCATGCGCATCACTAATTAGATGACGA 600
>seq1731777
Length=2471
Score = 84.2 bits (92), Expect = 1e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| || | ||||
Sbjct 716 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTC 775
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC 38203
|| | ||| || || ||||| || || | ||| |||||
Sbjct 776 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATC 814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321756466899455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |