Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2201104 127 1e-24 seq2193122 127 1e-24 seq2106077 127 1e-24 seq2031399 111 1e-19 seq1599480 89.7 3e-13 seq368065 89.7 3e-13 seq1731777 84.2 1e-11 >seq2201104 Length=234 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 224 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 164 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 130 >seq2193122 Length=261 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGCGGGAATCTCGT 137 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 136 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 102 >seq2106077 Length=234 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 224 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 164 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 130 >seq2031399 Length=344 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 234 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 175 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 174 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || ||||| Sbjct 114 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATAGT 55 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||||| ||||| |||||||| || Sbjct 54 CTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1599480 Length=5503 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||||||||||||||||||||||||||||| | |||||||||| ||||| |||| | | | Sbjct 3896 TCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTTGTGCT 3955 Query 20010 AATATTTAGCCTTA 20023 |||||||||||| Sbjct 3956 GGTATTTAGCCTTA 3969 >seq368065 Length=1064 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA----GTAGATAGGG----GGTAATCT 25953 ||||||||||||||||||||||||| ||| ||| |||| |||| || |||| Sbjct 697 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATCTTTTGTAGGTAGGACAGTGGGAATCG 638 Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| ||||||||| |||||||||||||||||| Sbjct 637 CGTTCTTCCATTCATGCGCATCACTAATTAGATGACGA 600 >seq1731777 Length=2471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| || | |||| Sbjct 716 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCGTC 775 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC 38203 || | ||| || || ||||| || || | ||| ||||| Sbjct 776 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATC 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321756466899455