Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1557410 259 6e-64 seq1725941 114 2e-20 seq1615235 114 2e-20 seq1599774 114 2e-20 seq1700391 107 2e-18 seq2307158 93.3 5e-14 >seq1557410 Length=8730 Score = 259 bits (286), Expect = 6e-64 Identities = 626/940 (67%), Gaps = 17/940 (2%) Strand=Plus/Plus Query 32311 TTCTTTAA-AAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 32366 ||| |||| |||||| |||| | | |||| ||| ||| | || ||||| |||||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 32367 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATA 32426 || | || ||| || || | || || || || || || || ||||| | ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 32427 TTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 32486 || ||||| || || |||||||| || ||| || | || |||| ||| Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC 6656 Query 32487 ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT-CATTCCTAT 32545 | | ||| ||||| ||||| || | || | ||| | ||||| ||| | | Sbjct 6657 CTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAAA 6716 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 | || || | | ||| |||| ||||| || ||||| || || || | | || Sbjct 6717 GTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAAT 6776 Query 32606 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 || | ||||| | | || ||| | | | ||||| ||||||| || || Sbjct 6777 TATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGC 6836 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 || || || ||| |||||| ||||| ||| | | ||| | |||||| ||||| || || Sbjct 6837 AAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGG 6896 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| || || | || || ||||| ||||| || ||||| | ||||||||||| || || Sbjct 6897 CATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCC 6956 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCA 32842 ||| ||||| |||||||| | || ||||| || | | | |||| ||||| Sbjct 6957 TTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCA 7016 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 | |||||| |||||| | | ||||||||||| || || || ||||| ||||| Sbjct 7017 ACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 | | | |||| ||| |||||||| || || ||||| |||||||||||||| | || Sbjct 7077 AAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGA 7136 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 ||| ||||||| |||| ||||| || || ||||| || ||| || |||| || Sbjct 7137 ATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA-GTAGGCT------TCTGAAC 7189 Query 33023 TTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 ||| || |||||| | | | || || ||||| ||| | | |||||| |||||||| | Sbjct 7190 TTCTTGGCCAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGA 7248 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | |||| ||| | ||| |||| | | | || || | | | ||| | | | Sbjct 7249 AAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAA 7308 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 | || || || | |||||| || ||| | |||||||| || | ||| || || ||||||| Sbjct 7309 TGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 7368 Query 33202 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | ||| || ||||| |||| ||| || || || ||||| Sbjct 7369 TTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1725941 Length=6718 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 3163 AGGCTCCAGGTAGATAGC 3180 >seq1615235 Length=3244 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 32803 C 32803 | Sbjct 2993 C 2993 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | ||| || |||||||| |||||| Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268 >seq1599774 Length=14829 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 6483 CTGTTTCTTATACCATA 6467 >seq1700391 Length=5054 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3357 >seq2307158 Length=1450 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | ||||||||||| ||||||||| Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| || || || || ||||| || | || || || || ||||| Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 ||||| | || | ||| ||||| ||||| ||||||||| Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608038771878000