Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1557410 201 1e-46 seq1615235 109 6e-19 >seq1557410 Length=8730 Score = 201 bits (222), Expect = 1e-46 Identities = 442/657 (67%), Gaps = 13/657 (2%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | | |||||| ||||| | | ||| |||| | ||| ||| Sbjct 6778 ATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCA 6837 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 ||||| | ||||||| || |||| || || || | ||| | ||||| | || || Sbjct 6838 AAGTCACAACGTAAACCCTCATCTC-TGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGG 6896 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | |||||||| |||||| ||||| ||||| || |||||| ||||||||| || || || Sbjct 6897 CATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCC 6956 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || |||| | |||| | | | || || | ||||| Sbjct 6957 TTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCA 7016 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || | |||||| || || ||| | |||||| | ||||| || || || || || Sbjct 7017 ACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | |||||| ||||| || || || || ||| |||||| | ||| Sbjct 7077 AAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGA 7136 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || | | ||||||||||| || |||||||| ||| |||| || Sbjct 7137 ATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCT-------TCTGAAC 7189 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||| | | || | || ||||| ||| | | || ||||||||| || Sbjct 7190 TTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAA 7249 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTT-TAAGCTTATCCCAATCGGAT 93574 ||||| | | | ||| |||||| ||| ||| ||| | ||| ||||| | | Sbjct 7250 AGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCT--TCCCAGTGCTAA 7307 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || |||||||| || || || | |||||||| || | || ||||| || ||| Sbjct 7308 ATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATAC 7367 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || ||| || || || |||| ||| || || |||||||| | | ||||| ||| Sbjct 7368 ATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAAGTGCTGGGGGTTTTCT 7424 >seq1615235 Length=3244 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 3093 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 3034 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 3033 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 2981 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 1375 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1316 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | |||||| || ||||| |||||||| ||||||| Sbjct 1315 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTC 1256 Query 93473 TCTAC 93477 || || Sbjct 1255 TCCAC 1251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534368461408200