Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 201 1e-46
seq1615235 109 6e-19
>seq1557410
Length=8730
Score = 201 bits (222), Expect = 1e-46
Identities = 442/657 (67%), Gaps = 13/657 (2%)
Strand=Plus/Plus
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||||| ||||||| | | |||||| ||||| | | ||| |||| | ||| |||
Sbjct 6778 ATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCA 6837
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156
||||| | ||||||| || |||| || || || | ||| | ||||| | || ||
Sbjct 6838 AAGTCACAACGTAAACCCTCATCTC-TGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGG 6896
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| |||||||| |||||| ||||| ||||| || |||||| ||||||||| || || ||
Sbjct 6897 CATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCC 6956
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
|||||| || ||||| || |||| | |||| | | | || || | |||||
Sbjct 6957 TTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCA 7016
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| | |||||| || || ||| | |||||| | ||||| || || || || ||
Sbjct 7017 ACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || | || | |||||| ||||| || || || || ||| |||||| | |||
Sbjct 7077 AAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGA 7136
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || | | ||||||||||| || |||||||| ||| |||| ||
Sbjct 7137 ATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCT-------TCTGAAC 7189
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|||||| ||| | | || | || ||||| ||| | | || ||||||||| ||
Sbjct 7190 TTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAA 7249
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTT-TAAGCTTATCCCAATCGGAT 93574
||||| | | | ||| |||||| ||| ||| ||| | ||| ||||| | |
Sbjct 7250 AGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCT--TCCCAGTGCTAA 7307
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || || |||||||| || || || | |||||||| || | || ||||| || |||
Sbjct 7308 ATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATAC 7367
Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691
|| ||| || || || |||| ||| || || |||||||| | | ||||| |||
Sbjct 7368 ATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAAGTGCTGGGGGTTTTCT 7424
>seq1615235
Length=3244
Score = 109 bits (120), Expect = 6e-19
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | ||||||||||||||||||||| |||||||| |||
Sbjct 3093 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 3034
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 3033 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 2981
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| || || || | ||| ||||||||||||||| | || |||||
Sbjct 1375 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 1316
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
||||||||||| || |||||||| | |||||| || ||||| |||||||| |||||||
Sbjct 1315 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCTC 1256
Query 93473 TCTAC 93477
|| ||
Sbjct 1255 TCCAC 1251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534368461408200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |