Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1627958 116 3e-21 seq2677557 105 5e-18 seq2031399 105 5e-18 seq2929101 95.1 1e-14 seq1537392 95.1 1e-14 seq1799193 87.8 1e-12 >seq1627958 Length=3316 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || | |||| |||||||| || ||| Sbjct 93 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAG 152 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || ||||| Sbjct 153 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCA 212 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||||| || || ||||| Sbjct 213 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAA 272 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| | ||||| |||||| | || || || ||| | || | |||||| Sbjct 273 CATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGGT 321 >seq2677557 Length=202 Score = 105 bits (116), Expect = 5e-18 Identities = 135/185 (73%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 189 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 130 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | ||||| ||||| |||||||||||||| | ||| ||||| || Sbjct 129 TGACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCA-TCCCCCCGACCA 71 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || |||| |||||||| ||||||| | | |||||| || ||| | ||||| ||||| Sbjct 70 GCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAA 11 Query 22398 CATTC 22402 ||||| Sbjct 10 CATTC 6 >seq2031399 Length=344 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || ||||||| || || ||| || Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || ||| Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 249 >seq2929101 Length=1797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22224 AATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATAC 22283 ||| || || || || | || || || || | || ||||| || | ||| || || Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCAAGTCCAGTGACAC 1089 Query 22284 CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACG 22343 | | || || ||||| |||| |||||||||||||| || ||||| || || || | Sbjct 1088 CATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAGCA 1029 Query 22344 TCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403 ||| |||||| | | |||||| | |||||| |||||| | || ||||||||||| || Sbjct 1028 TCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATCCA 969 Query 22404 AAAAGAATCCAC 22415 |||| ||||| Sbjct 968 GGAAGAGTCCAC 957 >seq1537392 Length=19804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | ||||| || || |||| || || || || ||| Sbjct 11859 GATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAA 11918 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||| |||| || ||||||||||| || || | || ||||| Sbjct 11919 TGACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCA 11978 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || ||||| || |||||| | | ||| | |||| | || || ||||| Sbjct 11979 GCAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAA 12038 Query 22398 CATTCAAAAAGAATCCACCATACATTT 22424 ||| || ||||| |||||| | || || Sbjct 12039 CATCCAGAAAGAGTCCACCCTGCACTT 12065 >seq1799193 Length=4297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| | ||||| | |||| | || || || || |||||||||| || ||| || Sbjct 1874 AGATGTAGATTTTCATAAAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCT 1933 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| || || | || || ||||| || ||||| || ||||| || |||| Sbjct 1934 CGGATACAAGAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATC 1993 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||| | || || ||||| |||| || |||| ||| | || | || || |||| Sbjct 1994 AACAAAGACTAATTTTTGCTTGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTACA 2053 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||||| | ||||| | ||| | || ||| || Sbjct 2054 ACATTCAAAAGAAGTCCACTCTTCATCTTGTGTTGAGA 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403198469307325