Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1627958 116 3e-21
seq2677557 105 5e-18
seq2031399 105 5e-18
seq2929101 95.1 1e-14
seq1537392 95.1 1e-14
seq1799193 87.8 1e-12
>seq1627958
Length=3316
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| || || | || || || | |||| |||||||| || |||
Sbjct 93 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAG 152
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || || |||| ||| || ||||||||||| || || || || |||||
Sbjct 153 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCA 212
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | | || |||||||| |||||| | || ||| |||||||| || || |||||
Sbjct 213 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAA 272
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||| | ||||| |||||| | || || || ||| | || | ||||||
Sbjct 273 CATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGGT 321
>seq2677557
Length=202
Score = 105 bits (116), Expect = 5e-18
Identities = 135/185 (73%), Gaps = 1/185 (1%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | || || || || |||| || || ||||| |||
Sbjct 189 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 130
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | ||||| ||||| |||||||||||||| | ||| ||||| ||
Sbjct 129 TGACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCA-TCCCCCCGACCA 71
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| |||| |||||||| ||||||| | | |||||| || ||| | ||||| |||||
Sbjct 70 GCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAA 11
Query 22398 CATTC 22402
|||||
Sbjct 10 CATTC 6
>seq2031399
Length=344
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || ||||| | || || || || ||||||| || || ||| ||
Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || || || || ||||| || ||||| || |||
Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | || || ||||| ||||| || | || ||| || || | || || |||
Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || ||||| | ||| | || ||| || | || || |||
Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 249
>seq2929101
Length=1797
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 22224 AATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATAC 22283
||| || || || || | || || || || | || ||||| || | ||| || ||
Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCAAGTCCAGTGACAC 1089
Query 22284 CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACG 22343
| | || || ||||| |||| |||||||||||||| || ||||| || || || |
Sbjct 1088 CATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAGCA 1029
Query 22344 TCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403
||| |||||| | | |||||| | |||||| |||||| | || ||||||||||| ||
Sbjct 1028 TCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATCCA 969
Query 22404 AAAAGAATCCAC 22415
|||| |||||
Sbjct 968 GGAAGAGTCCAC 957
>seq1537392
Length=19804
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| || || | ||||| || || |||| || || || || |||
Sbjct 11859 GATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAA 11918
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || || ||| |||| || ||||||||||| || || | || |||||
Sbjct 11919 TGACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCA 11978
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| || | || ||||| || |||||| | | ||| | |||| | || || |||||
Sbjct 11979 GCAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAA 12038
Query 22398 CATTCAAAAAGAATCCACCATACATTT 22424
||| || ||||| |||||| | || ||
Sbjct 12039 CATCCAGAAAGAGTCCACCCTGCACTT 12065
>seq1799193
Length=4297
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||| | ||||| | |||| | || || || || |||||||||| || ||| ||
Sbjct 1874 AGATGTAGATTTTCATAAAAATCCTTACAGGGAAGACCATCACTCTTGAGGTTGAACCCT 1933
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| ||||| || || | || || ||||| || ||||| || ||||| || ||||
Sbjct 1934 CGGATACAAGAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATC 1993
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
||||| | || || ||||| |||| || |||| ||| | || | || || ||||
Sbjct 1994 AACAAAGACTAATTTTTGCTTGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTACA 2053
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434
|||||||||| | ||||| | ||| | || ||| ||
Sbjct 2054 ACATTCAAAAGAAGTCCACTCTTCATCTTGTGTTGAGA 2091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403198469307325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |