Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1627958 161 2e-34 seq1537392 140 6e-28 seq2677557 118 2e-21 seq1715087 116 7e-21 seq2929101 114 2e-20 seq1799193 111 3e-19 seq1581579 111 3e-19 seq2357151 105 1e-17 seq2447078 96.9 6e-15 seq2955825 93.3 7e-14 seq1361224 86.0 1e-11 >seq1627958 Length=3316 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | || ||| |||||||| || ||||||||||| | |||||| || || || Sbjct 320 CCTCCCCTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAC 261 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||| |||||||| || || | || || || || || || Sbjct 260 ACGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGG 201 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||||||||||| ||| |||||||| | || ||| Sbjct 200 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACT 141 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||| || || |||||||| Sbjct 140 TCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq1537392 Length=19804 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 |||||| || ||||||||||| |||||||| || || || || || ||||||| | Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 ||| ||||| || || || | || || || || || | ||||||||||||||||| || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 |||| || |||| ||| |||||||| | ||||| || | ||||||||| || || Sbjct 11946 CTTTTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCC 11887 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || |||||||| Sbjct 11886 GGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2677557 Length=202 Score = 118 bits (130), Expect = 2e-21 Identities = 136/182 (75%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 68280 ATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTT 68339 ||||| || ||||| || || ||||| || | | | || || || ||||| || | Sbjct 8 ATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACAC 67 Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || |||||||| ||| |||| ||||||||||| || || || |||||| |||||||||| Sbjct 68 TGCTGGTCGGGGGGA-TGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTG 126 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || || | ||||||||| || || || |||||||| ||||| |||||| Sbjct 127 TCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGC 186 Query 68460 AT 68461 || Sbjct 187 AT 188 >seq1715087 Length=7196 Score = 116 bits (128), Expect = 7e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | |||||||| Sbjct 7031 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 7090 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || |||||||| || || ||||| || || || Sbjct 7091 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCTTCTTTATCCTGG 7150 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| ||||| || |||||||||||| Sbjct 7151 ATCTTGGCCTTCACATTCTCGATGGTGTC 7179 >seq2929101 Length=1797 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||||| |||||||| ||||| || || || | ||||| || Sbjct 945 ACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTCC 1004 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || | | ||||| || || ||||| ||||| || || ||||||||||| Sbjct 1005 AGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGG 1064 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | || | ||||| |||||||||||| || | || || | ||| ||||| || Sbjct 1065 GTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGTCTTG 1124 Query 68433 CCCGTGAGGGTCTTGACGAATAT 68455 ||||| |||||||| || ||||| Sbjct 1125 CCCGTCAGGGTCTTCACCAATAT 1147 >seq1799193 Length=4297 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 ||||| | ||| || | || || ||||||| ||||| ||||| || || || | || Sbjct 2096 CGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTA 2037 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 |||||||||| ||||| | || || || ||||||||||| || || ||||| ||| Sbjct 2036 TGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCT 1977 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 ||||| || |||||||| ||||| || || | || || | | ||| || || | Sbjct 1976 TCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGA 1917 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || ||| | || | ||| |||| ||| Sbjct 1916 GTGATGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq1581579 Length=3724 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | || || |||| ||| || ||| ||||||| |||||||| || || || Sbjct 3026 CCTCCCCTCAAGCTCAGGACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCAGAC 2967 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||| | || ||||| ||| || || | | || || |||| || Sbjct 2966 AGGGTGCGCCCATGTTCCAGCTACTTCCTGGCAAAGATCAACCCCTGCTGATCGGAAGGG 2907 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||| ||||||||||||| |||||||||||||| | ||||||| || || || Sbjct 2906 ATGTCTTCCTTGTCTTGGATCTTTGCCTTGACATTTCCAGTGGTGTCACTGGACTCAACC 2847 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 | | ||||||| | || || || | |||||| | ||| || Sbjct 2846 TTGAGGGTGATGATCTTGCCAGTCAAGGTCTTCAGGAAGAT 2806 >seq2357151 Length=385 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 ||| || || ||||| | || || || || ||||||||||||||||| ||||||||||| Sbjct 6 GGCAAAGATCAGTCTCCGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 65 Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 ||| ||| |||||||| | || ||||| | |||||||| || || || ||||| Sbjct 66 GACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTGCCAGTCAGGGT 125 Query 68444 CTTGACGAATATCTGCAT 68461 ||| || || |||||||| Sbjct 126 CTTCACAAAGATCTGCAT 143 >seq2447078 Length=448 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || || || || || ||||||||||||||||| |||||||||||||| ||||||| Sbjct 439 CTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATG 380 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | || || || | ||||||||| || || || | ||| || || || ||| Sbjct 379 GTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATC 320 Query 68457 TGCATT 68462 |||||| Sbjct 319 TGCATT 314 >seq2955825 Length=1785 Score = 93.3 bits (102), Expect = 7e-14 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGA-GTGTCCTCCCATCTTCTAACTGCTT 68320 || ||||||||||| |||||||| || || |||| | || | ||||| || | ||| || Sbjct 162 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGACGAGTGCAGCCATCCTCCAGCTGTTT 103 Query 68321 CCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGC 68380 || || ||||| || | || |||| ||||| ||||| |||||| |||| || || || Sbjct 102 GCCTGCAAATATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGCCTTGGATTTTGGC 43 Query 68381 CTTGACGGCCTCGATGGTGTC 68401 |||||| ||| ||| |||| Sbjct 42 TTTGACGTTCTCCATGCTGTC 22 >seq1361224 Length=316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || | ||| || || ||||| || | || |||||||| || || ||||| Sbjct 316 TTGCCTGCAAAGACGAGACTCTGCTGGTCAGGGAGGATCCCTTCCTTATCCTGGATCTTG 257 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| ||| | |||||| | || || ||||||||||| || || || || Sbjct 256 GCCTTCACGTTCTCAACGGTGTCACTGGGCTCCACCTCCAAGGTGATAGTCTTGCCAGTC 197 Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465 |||||||| || || || |||||| || Sbjct 196 AGGGTCTTTACAAAGATTTGCATTTTG 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 884396861634600