Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2031399 114 1e-20 seq1537392 86.0 5e-12 seq1799193 82.4 6e-11 seq1731777 82.4 6e-11 >seq2031399 Length=344 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 249 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 190 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| | || || | || || || ||||| Sbjct 189 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 130 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || |||||| Sbjct 129 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 70 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 69 CTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 >seq1537392 Length=19804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || | ||||| | ||||| ||| Sbjct 12056 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCACCTGTTTCCCA 11997 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | || ||| || || ||| | |||||||| ||||| ||||||| | Sbjct 11996 GCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGATCTTTTCCATG 11937 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 11936 ACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 11877 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 11876 TTCACAAAGATCTGCAT 11860 >seq1799193 Length=4297 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| | ||| |||||||| || | ||| | || || | |||||||||||||| || Sbjct 2103 ACCACGACGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGA 2044 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || | ||| | || || | ||||| || ||||| Sbjct 2043 CAAAGTATGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGG 1984 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||||| |||| | ||| || || | || ||| || Sbjct 1983 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAAC 1924 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||| ||||||| ||| Sbjct 1923 CTCAAGAGTGATGGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq1731777 Length=2471 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| || | ||| | || || || |||||||||||||| || || ||||| Sbjct 711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 770 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||| ||||| || ||||| | || || | || || || ||| |||| ||||| Sbjct 771 CCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCC 830 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 | | ||||| ||||| | || | ||||| | || ||| || || | || Sbjct 831 TCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTG 890 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || | || |||||||||||||||||||| Sbjct 891 ATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCAT 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403588864653660