Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1557410 104 4e-17 seq1700391 93.3 8e-14 >seq1557410 Length=8730 Score = 104 bits (114), Expect = 4e-17 Identities = 178/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || |||||||| || || ||| ||||||||| ||| | | Sbjct 7076 CTCTTCAATGCCATTGAAACGATGCCTTGTGTCTAGATGAAGGCGGATTGGACCTTGTGT 7017 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| | | || || || | ||| || | ||||||||| |||| || || Sbjct 7016 TGGATTGGGGACAAAGAGGCTACCTACGGAGAACATGTTGTAGCCTTTGCCGCAGTGGAA 6957 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 ||||||||||| || || || || || || |||||||| ||| | ||| | ||| Sbjct 6956 GGCATCTTCTTTTCTGGTTTTTTTGCATCGATATTCTGGCTAAAGAAATGAGGACT-GAT 6898 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || ||||| || || | ||||| | ||||| || ||||| | | | | ||||| Sbjct 6897 GCCTGGCCTCACATTTTCCTATGAACTTACTAGCAGAGATGAGGGTTTACGTTGTGACTT 6838 Query 42848 TGCCTGCCTCCTGTTC 42863 ||||||||| ||||| Sbjct 6837 TGCCTGCCTGATGTTC 6822 >seq1700391 Length=5054 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || ||||||||||| | || || | || |||| Sbjct 3362 TGGTCGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 3303 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || ||||||||||||||| Sbjct 3302 GGCTAAAGAAGAGAGGTCTT-ATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGG 3244 Query 42825 GACGA 42829 || || Sbjct 3243 GATGA 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 906196100266800