Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq394565 196 5e-45 seq394531 167 2e-36 seq1948974 145 8e-30 seq479572 140 3e-28 seq1683812 109 6e-19 seq394708 107 2e-18 seq399366 95.1 1e-14 >seq394565 Length=1059 Score = 196 bits (216), Expect = 5e-45 Identities = 414/613 (68%), Gaps = 16/613 (3%) Strand=Plus/Plus Query 121878 TCCAAACTTTAATATTCTTCGTACCGGCGCCACCTCTTCAATTATATAGTG-TCCGTAAT 121936 ||||| ||| |||| |||| | || |||| |||||||||| || || | | || | Sbjct 399 TCCAACCTTAAATAGTCTTTTCATTGGAGCCAATTCTTCAATTAGGTACTGATTCATA-T 457 Query 121937 GGATGGGGGCGTGGGTCTGTTTGACAGACATAAACTCATCGATGAGTGCCCGGGAGGAGG 121996 | | ||||| || || | ||| ||||||||||||||| ||||| || | | | | Sbjct 458 GTACAGGGGCATGAGTGTTTTTCTGAGACATAAACTCATCTATGAGAGCTCTGTGGCTGC 517 Query 121997 CTGAGAGTGCGGGGAATGCCTCCTGCAGAAAGCTGCAGGGCTGCTCCAGAAACACGTCAG 122056 ||| |||| ||| ||||| ||||| | ||| ||||| || |||| ||| || || | Sbjct 518 TTGAAAGTGTGGGAAATGCTTCCTGTAAAAATTGACAGGGTTGATCCAAAAAGACATCTG 577 Query 122057 TGCCAGCAATCACTACAAACTGCACCTCTGTGTTGCTGGTGGCTGGGTGCCCTCCAAGTC 122116 | ||| || || ||| | |||| || ||||||||||| |||| ||| |||| | Sbjct 578 TTCCATTGATAACCACATATTGCAGATCGGTGTTGCTGGTTGCTG---GCCTTCCACATA 634 Query 122117 GCTGGCT---GTACTCGTTGACCATGTTGTAGAGTCCCCTGTTGTTGCGCAGAAGCTCCT 122173 | | | ||| || | |||| | | | |||||||||||||| | ||| | || | Sbjct 635 ACCTGTTAGAGTATTCTGTCACCAAGGTATGAAGTCCCCTGTTGTTTCTCAGTATGTCAT 694 Query 122174 CCTTGTTGAAAAATGCCCGGCAGGGGCTGTAGAGGCCCGGGACGGCCGTCTGGCGATAGG 122233 ||||||| |||||| | || || ||||| | || || | ||| |||| | ||| | Sbjct 695 CCTTGTTAAAAAATTGTCTACATGGACTGTACATCCCTGGAGCAGCCATCTGTCTATAAG 754 Query 122234 AGGAGTTGTACATGATGTCACCCAGAGAACCCAGCTGAGATGCCCAGGGATTCACAGTGC 122293 || |||||| | | ||||| ||||| || ||| || ||||| || || | || Sbjct 755 TGGTGTTGTATAACACATCACCAAGAGATCCGGCCTGCGAGGCCCACGGGTTGATTGTAT 814 Query 122294 TCCGGTATTCATAGGCGGCATCCGGGCGAGAATGGTCATAGATGAGCCCCTCGGCAACCT 122353 | | |||||||| || | || || || |||||||| | | ||| || ||| Sbjct 815 TTCTATATTCATAAGCTGGGTCTGGAATGGAGTGGTCATACAAAAATTTCTCAGCTGCCT 874 Query 122354 C----CTGATTGTAGTTTTCACAGGAGACCACACAGGCGGCCCGTCCCCTTGGAGAGTTG 122409 | |||| ||| ||||| |||| ||||| || |||| ||||||||| ||| Sbjct 875 CAGTGCTGAACGTA----TCACATGAGATAACACAAGCTGCCCTGCCCCTTGGACTGTTT 930 Query 122410 GACTTTTGAAAATAAGCCACGTCTGCCGTGACCGGTGTTACGATAATCTCACAGGTGGCC 122469 || |||||| || || || || || || || || || | | ||| |||||||| || Sbjct 931 GAAGATTGAAAGTAGGCTACATCAGCTGTTACAGGAGTCAACACAATTTCACAGGTTGCA 990 Query 122470 TGCTGGCCGTGGC 122482 |||| ||||||| Sbjct 991 AGCTGACCGTGGC 1003 >seq394531 Length=2006 Score = 167 bits (184), Expect = 2e-36 Identities = 404/612 (66%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 125313 GTCCAGGAAGAAGGAGTGCTCCAGCAGATGCCTCTTGAACATGGCAATGAGGTCAGACTT 125372 ||| || || || ||||| || | || || ||||| ||||| | | | |||||| || Sbjct 785 GTCGAGAAAAAATGAGTGGTCAACCAAGTGACTCTTAAACATAGAGACCATGTCAGATTT 844 Query 125373 GACAGTCTTGGAGAACCCCCTCTCAGTGAAGGTAGGATCCGCCAGGGTCTGCAGGATAAA 125432 || || || |||||||| ||| | || || || | || | | || ||||| Sbjct 845 AACTGTTTTTCTTAACCCCCTTTCATCATATGTTGGGTCTGTGAGAGCCCTGAGAATAAA 904 Query 125433 CATGGGAGGGGCGTGGCGAAGCTTCACACTCAGGACGGTGTTAATGAGGCCCCTCTCCAG 125492 || || || | ||| | | || ||| | | || |||| || || |||||||| | Sbjct 905 CAATGGGGGTGAGTGTCTCAATTTTACATTTAACACTGTGTCAACAAGACCCCTCTCTAA 964 Query 125493 GGCATCGACCCCAAACTGTAGGGCCGAGGCCACGGTCTTGACAGCCCCCACGTACTCTGC 125552 ||||| || |||||||| || || || | | || || |||||||| | |||||||| Sbjct 965 TGCATCAACACCAAACTGAAGAGCTGATGTGATTGTTTTCACAGCCCCAATGTACTCTGT 1024 Query 125553 GTACTCGACCGGGGTCTCGGGGATACTATGCAGGATCTCCAGATCCAGCATGGACAGTTC 125612 | || | || ||||| | | | || | |||||||| || | |||| || Sbjct 1025 GATGTCAAGAGGAGTCTCTTTTGCAGTGTAAAGAAGTTCCAGATCAAGGGTAGACAACTC 1084 Query 125613 CATTTCCGTACTAATGTGGTGTTTGTGGCAATTTTTGACCACAATGAATGTCCGCTGCTT 125672 || || | || || |||||||||| ||| || | ||| ||| || ||| || Sbjct 1085 AATCTCAGCGCTGATATGGTGTTTGTTGCAGACCTTCATCACTATGTATTGTTTCTGTTT 1144 Query 125673 GCTGGGTCTCCTTCCGTCCCCGTGAGCAATGGTGGGGACGGAGATTCGAAATTGAATCTT 125732 || ||| | ||| || || || || || || || || || ||| ||| || || || Sbjct 1145 TCTAGGTACGCGTCCATCTCCATGGGCTATTGTTGGCACAGATATTTTAAACTGTATTTT 1204 Query 125733 GCCATCCGTCATACGACTCAGGTCTTTGAATTCCGTGTTCACACAGGACACGGCCAGTGC 125792 ||||| ||||| | | || || || ||||| ||||| ||||| || || |||| | Sbjct 1205 CCCATCTGTCATTCTTTTTAGATCCTTAAATTCAGTGTTGACACAAGAAACTGCCAAAGA 1264 Query 125793 CGTCTCCAGGAAGCGAACATATTGGATGGCGTTCGTGTAGACCCCGAGTAGCACCTCAAA 125852 || || | || |||| | ||||||||||| || || || || | ||| |||||||| Sbjct 1265 AGTTTCTAAAAATTTAACAAACTGGATGGCGTTGGTATACACACCTAATAGAACCTCAAA 1324 Query 125853 CTTGATGCCCGCCTCTCTGGCATCCTTGCCCACCAGCAGGTCAAAGCTATGAAACAGCCC 125912 | | || ||||| |||| || || | || || |||||||| | ||| ||||| Sbjct 1325 TCTAACACCATTTTCTCTCACATCTTTTCCTAGGAGAAGTTCAAAGCTCTTAAAGAGCCC 1384 Query 125913 CTCGGCCGCTGA 125924 ||| || || || Sbjct 1385 CTCTGCTGCAGA 1396 >seq1948974 Length=2508 Score = 145 bits (160), Expect = 8e-30 Identities = 268/384 (70%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 117748 TTTCAGAGCATCCGGGGGCAGACATTTCACCTCTTGTTTGTGGACGAGGCTAACTTTATC 117807 |||||||||||| | || || || ||| ||||| ||| | || ||||| || ||||| Sbjct 1027 TTTCAGAGCATCAGAGGACAAACTTTTAACCTCCTGTACATCGATGAGGCCAATTTTATT 1086 Query 117808 AAGAAGGAGGCCCTGCCGGCGATCCTGGGCTTTATGCTTCAGAAGGATGCCAAGATTATC 117867 |||||||| | || || || || ||||| |||||| | || || ||||| ||| | || Sbjct 1087 AAGAAGGACTCTCTTCCTGCAATACTGGGATTTATGTTACAAAAAGATGCTAAGTTGATA 1146 Query 117868 TTCATCTCGTCTGTGAACTCGGCTGACCAGGCCACCAGCTTTCTTTATAAGCTGAAG-GA 117926 || || || ||||| ||||| ||||||| | |||||| ||||| | | | ||| | Sbjct 1147 TTTATATCATCTGTTAACTCTTCTGACCAATCAACCAGC-TTCTTGTTCAATTTAAGAAA 1205 Query 117927 TGCTCAG-GAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATT 117985 ||| ||| || || | || | ||||||||||| || | || || | | ||| Sbjct 1206 TGC-CAGTGAAAAAATGTTAAATATTGTAAGTTATGTTTGCCCTGACCACAGAGAGCATT 1264 Query 117986 TTGACATGCAGGACAGCATGGTCTCATGCCCCTGCTTTCGCCTGCACATCCCGTCCTACA 118045 || |||||||| | || ||||| ||||||| | || |||||||| | |||| Sbjct 1265 TTAGTTTGCAGGACTCATTAGTTTCATGTCCCTGCTACAGACTTCACATCCCCACATACA 1324 Query 118046 TCACCATGGA-CAGTAAC-ATCCGAGCAACCACCAACCTCTTTCTGGACGGGGCCTTTAG 118103 |||| || || || ||| || | || || ||||| || |||| |||||||| | Sbjct 1325 TCACTATAGATCA--AACAATTAAAAACACAACAAACCTTTTCATGGATGGGGCCTTCAA 1382 Query 118104 CACCGAGCTGATGGGTGACACCTC 118127 ||| || |||||||| || |||| Sbjct 1383 CACAGAACTGATGGGCGATGCCTC 1406 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 116899 AATGTGGACATCCATAGCTCTCTCATGCGTTTGGCTACAGCATCATAGCGCTTGTTTCTG 116958 ||||||||||||||| | |||||||| || | ||||||||||| ||||||| | Sbjct 221 AATGTGGACATCCATTGTTCTCTCATCTTCTTAACAACAGCATCATATTTCTTGTTTTTT 280 Query 116959 GTGGATTTAAATAACAGGGCCCCGTAGACAGTCTTTTGT-GAGTAAATAGAGATGATGAC 117017 ||| | ||||||||||| || || || || |||||| ||||| ||||| || |||| Sbjct 281 GTGCACTTAAATAACAGATTTCCATACACTGT-TTTTGTGGAGTAGATAGAAATAATGAT 339 Query 117018 ATGGATGTA 117026 ||| || || Sbjct 340 ATGAATATA 348 >seq479572 Length=815 Score = 140 bits (154), Expect = 3e-28 Identities = 303/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 155650 GTCACCGTCTCGGCGATGGAGAGGCAGGGAAAGAGGCCGTTGGCCACCCCGGTGAAGCCG 155709 ||||| ||||| ||||| | || |||| ||||| || || || || || || Sbjct 489 GTCACAGTCTCTGCGATTTTAACACAAGGAAGTAGGCCTGAAGCAACTCCTGTAAATCCA 430 Query 155710 TAGACGGCGTTGCACGTGCACTTGATGGCCAGCTGCTGCTTGTCGAGGATGGTCCTTTGG 155769 || || || ||||| || || || ||||| || |||||||| || |||||||| || Sbjct 429 TATACTGCATTGCAGGTACATTTTATGGCTAGTTGCTGCTTATCAAGGATGGTTCTCATC 370 Query 155770 CGCGGATCCTCGCAGGCCGCCAGCAGCTTCTTGATGGCCTTGCGCTTGGCCAGCCAGGAG 155829 || || ||| |||||| ||| |||||| || | ||| || ||||| Sbjct 369 ACAGGGTCTGTGCACTGGGCCAGCTCTTTCCTGATGGATTTTCTCTTTGCAAGCCACACA 310 Query 155830 GTCAACAGACTAGCCAAGAAGGACTCGTGCACGTGCTTCTTCACAAAGTGGTAGACGCCC 155889 || ||||| | |||| || || | |||||||| || ||||| || | |||| Sbjct 309 GTTAACAGTTTGGCCAGTAAAGATACAGATACGTGCTTTTTAACAAAATGAACCAGGCCC 250 Query 155890 CCCGTGAGCCTGAAGGACTCATAGTCTTCTCCCGGGCGC----AGGCCGGCTAGCCTGTG 155945 |||| ||| | ||||||||| ||| || | | | || | ||| Sbjct 249 GAGCTGAGGTGGAAAGTCTCATAGTCATCT-----GCACCTAAATGTGGGTGAAGGTGTA 195 Query 155946 CTCTTCTCCCGGCGTTATCATGGTAGAATAACAGAGATTATGAGCCTGAATGATGCTCGG 156005 ||||| | || |||| |||||| ||||| || || || ||||| || ||||| || Sbjct 194 GA-TTCTCATCG-GTGATCAGGGTAGAGTAACACAGGTTGTGTGCCTGTATAATGCTTGG 137 Query 156006 GTAGAGGCTGGCAAAGTCCACCACCAGAACCGGGGAGTTGTAGAATCC-GGACAGGGGCT 156064 |||||||||||||||||| || || ||||| |||| |||||| ||||| ||| ||||| Sbjct 136 GTAGAGGCTGGCAAAGTCTACTACTAGAACGGGGGTGTTGTAAAATCCAGGAAGTGGGCT 77 Query 156065 GGATGACGGTGGCCCCCTGGTAGCCGTC 156092 ||| || ||||| |||||||| || || Sbjct 76 -GATAACAGTGGCGCCCTGGTATCCATC 50 >seq1683812 Length=3291 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 2045 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2104 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| ||||| | ||| || |||||| || || | || |||| |||| Sbjct 2105 TGCCGCAGGCTGAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAA 2164 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || |||| || |||| || ||||| Sbjct 2165 AGCTGAAGAATCTGAGGCTGCGGCTGCG 2192 >seq394708 Length=1234 Score = 107 bits (118), Expect = 2e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 114128 TTTAAGCAAAAAGCCAGCGTGTTTCTTATCCCCAGGCGCCACGGCAAGACCTGGATAGTC 114187 ||||| |||||||| || || ||| | || || || | || |||||||||||||| || Sbjct 254 TTTAAACAAAAAGCGAGTGTTTTTTTAATTCCTAGAAGGCATGGCAAGACCTGGATTGTT 313 Query 114188 GTGGCCATCATCAGCCTCATCCTCTCGAATCTCT--CCAACGTGCAAATAGGCTACGTGG 114245 || || ||||||| | | || || | |||| | ||| | || ||||| || |||| Sbjct 314 GTAGCAATCATCACCATGCTC--CTGGTATCTGTGGAAAACATTCACATAGGGTATGTGG 371 Query 114246 CTCACCAGAAACATGTCGCGTCCGCCGTTTTCACTGAAATTATTGACACCTTG-ACCAAG 114304 | ||||| |||||||| || | | || || || |||||||| | || ||| || || Sbjct 372 CCCACCAAAAACATGTTGCCAACTCAGTCTTTACAGAAATTATAAATACTTTGTACAAAT 431 Query 114305 AGCTTCGACTCCAAGCGTGTAGAGGTCAACAAGGAGACCAGCACCATCACGTTTAGGCAC 114364 | ||| | ||| | |||| | || || || | |||| || | | | | | Sbjct 432 GGTTTCCAACACAA-AATATAGAAATTAAGAAAGAAAATGGCACAATTATCTACAAGAAT 490 Query 114365 AGTGGGAAAATCTCCAGCACCGTAATGTGTGCCACCTGCTTCAATAAGAATGTAAG 114420 | | |||| | ||||| | ||||||||||| |||||||||||||||||||| Sbjct 491 GGAAGCAAAAGACCAAGCACTTTGATGTGTGCCACATGCTTCAATAAGAATGTAAG 546 >seq399366 Length=1397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 ||||||| || ||||| | ||||||||||||||||| |||||||| || || ||||||| Sbjct 797 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 856 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||| | ||||||||||| || Sbjct 857 TAGAAACCTACATGACAATGAA 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530391843007200