Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_009334.1
Length=172764
Score E
Sequences producing significant alignments: (Bits) Value
seq394565 196 5e-45
seq394531 167 2e-36
seq1948974 145 8e-30
seq479572 140 3e-28
seq1683812 109 6e-19
seq394708 107 2e-18
seq399366 95.1 1e-14
>seq394565
Length=1059
Score = 196 bits (216), Expect = 5e-45
Identities = 414/613 (68%), Gaps = 16/613 (3%)
Strand=Plus/Plus
Query 121878 TCCAAACTTTAATATTCTTCGTACCGGCGCCACCTCTTCAATTATATAGTG-TCCGTAAT 121936
||||| ||| |||| |||| | || |||| |||||||||| || || | | || |
Sbjct 399 TCCAACCTTAAATAGTCTTTTCATTGGAGCCAATTCTTCAATTAGGTACTGATTCATA-T 457
Query 121937 GGATGGGGGCGTGGGTCTGTTTGACAGACATAAACTCATCGATGAGTGCCCGGGAGGAGG 121996
| | ||||| || || | ||| ||||||||||||||| ||||| || | | | |
Sbjct 458 GTACAGGGGCATGAGTGTTTTTCTGAGACATAAACTCATCTATGAGAGCTCTGTGGCTGC 517
Query 121997 CTGAGAGTGCGGGGAATGCCTCCTGCAGAAAGCTGCAGGGCTGCTCCAGAAACACGTCAG 122056
||| |||| ||| ||||| ||||| | ||| ||||| || |||| ||| || || |
Sbjct 518 TTGAAAGTGTGGGAAATGCTTCCTGTAAAAATTGACAGGGTTGATCCAAAAAGACATCTG 577
Query 122057 TGCCAGCAATCACTACAAACTGCACCTCTGTGTTGCTGGTGGCTGGGTGCCCTCCAAGTC 122116
| ||| || || ||| | |||| || ||||||||||| |||| ||| |||| |
Sbjct 578 TTCCATTGATAACCACATATTGCAGATCGGTGTTGCTGGTTGCTG---GCCTTCCACATA 634
Query 122117 GCTGGCT---GTACTCGTTGACCATGTTGTAGAGTCCCCTGTTGTTGCGCAGAAGCTCCT 122173
| | | ||| || | |||| | | | |||||||||||||| | ||| | || |
Sbjct 635 ACCTGTTAGAGTATTCTGTCACCAAGGTATGAAGTCCCCTGTTGTTTCTCAGTATGTCAT 694
Query 122174 CCTTGTTGAAAAATGCCCGGCAGGGGCTGTAGAGGCCCGGGACGGCCGTCTGGCGATAGG 122233
||||||| |||||| | || || ||||| | || || | ||| |||| | ||| |
Sbjct 695 CCTTGTTAAAAAATTGTCTACATGGACTGTACATCCCTGGAGCAGCCATCTGTCTATAAG 754
Query 122234 AGGAGTTGTACATGATGTCACCCAGAGAACCCAGCTGAGATGCCCAGGGATTCACAGTGC 122293
|| |||||| | | ||||| ||||| || ||| || ||||| || || | ||
Sbjct 755 TGGTGTTGTATAACACATCACCAAGAGATCCGGCCTGCGAGGCCCACGGGTTGATTGTAT 814
Query 122294 TCCGGTATTCATAGGCGGCATCCGGGCGAGAATGGTCATAGATGAGCCCCTCGGCAACCT 122353
| | |||||||| || | || || || |||||||| | | ||| || |||
Sbjct 815 TTCTATATTCATAAGCTGGGTCTGGAATGGAGTGGTCATACAAAAATTTCTCAGCTGCCT 874
Query 122354 C----CTGATTGTAGTTTTCACAGGAGACCACACAGGCGGCCCGTCCCCTTGGAGAGTTG 122409
| |||| ||| ||||| |||| ||||| || |||| ||||||||| |||
Sbjct 875 CAGTGCTGAACGTA----TCACATGAGATAACACAAGCTGCCCTGCCCCTTGGACTGTTT 930
Query 122410 GACTTTTGAAAATAAGCCACGTCTGCCGTGACCGGTGTTACGATAATCTCACAGGTGGCC 122469
|| |||||| || || || || || || || || || | | ||| |||||||| ||
Sbjct 931 GAAGATTGAAAGTAGGCTACATCAGCTGTTACAGGAGTCAACACAATTTCACAGGTTGCA 990
Query 122470 TGCTGGCCGTGGC 122482
|||| |||||||
Sbjct 991 AGCTGACCGTGGC 1003
>seq394531
Length=2006
Score = 167 bits (184), Expect = 2e-36
Identities = 404/612 (66%), Gaps = 0/612 (0%)
Strand=Plus/Plus
Query 125313 GTCCAGGAAGAAGGAGTGCTCCAGCAGATGCCTCTTGAACATGGCAATGAGGTCAGACTT 125372
||| || || || ||||| || | || || ||||| ||||| | | | |||||| ||
Sbjct 785 GTCGAGAAAAAATGAGTGGTCAACCAAGTGACTCTTAAACATAGAGACCATGTCAGATTT 844
Query 125373 GACAGTCTTGGAGAACCCCCTCTCAGTGAAGGTAGGATCCGCCAGGGTCTGCAGGATAAA 125432
|| || || |||||||| ||| | || || || | || | | || |||||
Sbjct 845 AACTGTTTTTCTTAACCCCCTTTCATCATATGTTGGGTCTGTGAGAGCCCTGAGAATAAA 904
Query 125433 CATGGGAGGGGCGTGGCGAAGCTTCACACTCAGGACGGTGTTAATGAGGCCCCTCTCCAG 125492
|| || || | ||| | | || ||| | | || |||| || || |||||||| |
Sbjct 905 CAATGGGGGTGAGTGTCTCAATTTTACATTTAACACTGTGTCAACAAGACCCCTCTCTAA 964
Query 125493 GGCATCGACCCCAAACTGTAGGGCCGAGGCCACGGTCTTGACAGCCCCCACGTACTCTGC 125552
||||| || |||||||| || || || | | || || |||||||| | ||||||||
Sbjct 965 TGCATCAACACCAAACTGAAGAGCTGATGTGATTGTTTTCACAGCCCCAATGTACTCTGT 1024
Query 125553 GTACTCGACCGGGGTCTCGGGGATACTATGCAGGATCTCCAGATCCAGCATGGACAGTTC 125612
| || | || ||||| | | | || | |||||||| || | |||| ||
Sbjct 1025 GATGTCAAGAGGAGTCTCTTTTGCAGTGTAAAGAAGTTCCAGATCAAGGGTAGACAACTC 1084
Query 125613 CATTTCCGTACTAATGTGGTGTTTGTGGCAATTTTTGACCACAATGAATGTCCGCTGCTT 125672
|| || | || || |||||||||| ||| || | ||| ||| || ||| ||
Sbjct 1085 AATCTCAGCGCTGATATGGTGTTTGTTGCAGACCTTCATCACTATGTATTGTTTCTGTTT 1144
Query 125673 GCTGGGTCTCCTTCCGTCCCCGTGAGCAATGGTGGGGACGGAGATTCGAAATTGAATCTT 125732
|| ||| | ||| || || || || || || || || || ||| ||| || || ||
Sbjct 1145 TCTAGGTACGCGTCCATCTCCATGGGCTATTGTTGGCACAGATATTTTAAACTGTATTTT 1204
Query 125733 GCCATCCGTCATACGACTCAGGTCTTTGAATTCCGTGTTCACACAGGACACGGCCAGTGC 125792
||||| ||||| | | || || || ||||| ||||| ||||| || || |||| |
Sbjct 1205 CCCATCTGTCATTCTTTTTAGATCCTTAAATTCAGTGTTGACACAAGAAACTGCCAAAGA 1264
Query 125793 CGTCTCCAGGAAGCGAACATATTGGATGGCGTTCGTGTAGACCCCGAGTAGCACCTCAAA 125852
|| || | || |||| | ||||||||||| || || || || | ||| ||||||||
Sbjct 1265 AGTTTCTAAAAATTTAACAAACTGGATGGCGTTGGTATACACACCTAATAGAACCTCAAA 1324
Query 125853 CTTGATGCCCGCCTCTCTGGCATCCTTGCCCACCAGCAGGTCAAAGCTATGAAACAGCCC 125912
| | || ||||| |||| || || | || || |||||||| | ||| |||||
Sbjct 1325 TCTAACACCATTTTCTCTCACATCTTTTCCTAGGAGAAGTTCAAAGCTCTTAAAGAGCCC 1384
Query 125913 CTCGGCCGCTGA 125924
||| || || ||
Sbjct 1385 CTCTGCTGCAGA 1396
>seq1948974
Length=2508
Score = 145 bits (160), Expect = 8e-30
Identities = 268/384 (70%), Gaps = 8/384 (2%)
Strand=Plus/Plus
Query 117748 TTTCAGAGCATCCGGGGGCAGACATTTCACCTCTTGTTTGTGGACGAGGCTAACTTTATC 117807
|||||||||||| | || || || ||| ||||| ||| | || ||||| || |||||
Sbjct 1027 TTTCAGAGCATCAGAGGACAAACTTTTAACCTCCTGTACATCGATGAGGCCAATTTTATT 1086
Query 117808 AAGAAGGAGGCCCTGCCGGCGATCCTGGGCTTTATGCTTCAGAAGGATGCCAAGATTATC 117867
|||||||| | || || || || ||||| |||||| | || || ||||| ||| | ||
Sbjct 1087 AAGAAGGACTCTCTTCCTGCAATACTGGGATTTATGTTACAAAAAGATGCTAAGTTGATA 1146
Query 117868 TTCATCTCGTCTGTGAACTCGGCTGACCAGGCCACCAGCTTTCTTTATAAGCTGAAG-GA 117926
|| || || ||||| ||||| ||||||| | |||||| ||||| | | | ||| |
Sbjct 1147 TTTATATCATCTGTTAACTCTTCTGACCAATCAACCAGC-TTCTTGTTCAATTTAAGAAA 1205
Query 117927 TGCTCAG-GAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATT 117985
||| ||| || || | || | ||||||||||| || | || || | | |||
Sbjct 1206 TGC-CAGTGAAAAAATGTTAAATATTGTAAGTTATGTTTGCCCTGACCACAGAGAGCATT 1264
Query 117986 TTGACATGCAGGACAGCATGGTCTCATGCCCCTGCTTTCGCCTGCACATCCCGTCCTACA 118045
|| |||||||| | || ||||| ||||||| | || |||||||| | ||||
Sbjct 1265 TTAGTTTGCAGGACTCATTAGTTTCATGTCCCTGCTACAGACTTCACATCCCCACATACA 1324
Query 118046 TCACCATGGA-CAGTAAC-ATCCGAGCAACCACCAACCTCTTTCTGGACGGGGCCTTTAG 118103
|||| || || || ||| || | || || ||||| || |||| |||||||| |
Sbjct 1325 TCACTATAGATCA--AACAATTAAAAACACAACAAACCTTTTCATGGATGGGGCCTTCAA 1382
Query 118104 CACCGAGCTGATGGGTGACACCTC 118127
||| || |||||||| || ||||
Sbjct 1383 CACAGAACTGATGGGCGATGCCTC 1406
Score = 86.0 bits (94), Expect = 7e-12
Identities = 98/129 (76%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 116899 AATGTGGACATCCATAGCTCTCTCATGCGTTTGGCTACAGCATCATAGCGCTTGTTTCTG 116958
||||||||||||||| | |||||||| || | ||||||||||| ||||||| |
Sbjct 221 AATGTGGACATCCATTGTTCTCTCATCTTCTTAACAACAGCATCATATTTCTTGTTTTTT 280
Query 116959 GTGGATTTAAATAACAGGGCCCCGTAGACAGTCTTTTGT-GAGTAAATAGAGATGATGAC 117017
||| | ||||||||||| || || || || |||||| ||||| ||||| || ||||
Sbjct 281 GTGCACTTAAATAACAGATTTCCATACACTGT-TTTTGTGGAGTAGATAGAAATAATGAT 339
Query 117018 ATGGATGTA 117026
||| || ||
Sbjct 340 ATGAATATA 348
>seq479572
Length=815
Score = 140 bits (154), Expect = 3e-28
Identities = 303/448 (68%), Gaps = 13/448 (3%)
Strand=Plus/Minus
Query 155650 GTCACCGTCTCGGCGATGGAGAGGCAGGGAAAGAGGCCGTTGGCCACCCCGGTGAAGCCG 155709
||||| ||||| ||||| | || |||| ||||| || || || || || ||
Sbjct 489 GTCACAGTCTCTGCGATTTTAACACAAGGAAGTAGGCCTGAAGCAACTCCTGTAAATCCA 430
Query 155710 TAGACGGCGTTGCACGTGCACTTGATGGCCAGCTGCTGCTTGTCGAGGATGGTCCTTTGG 155769
|| || || ||||| || || || ||||| || |||||||| || |||||||| ||
Sbjct 429 TATACTGCATTGCAGGTACATTTTATGGCTAGTTGCTGCTTATCAAGGATGGTTCTCATC 370
Query 155770 CGCGGATCCTCGCAGGCCGCCAGCAGCTTCTTGATGGCCTTGCGCTTGGCCAGCCAGGAG 155829
|| || ||| |||||| ||| |||||| || | ||| || |||||
Sbjct 369 ACAGGGTCTGTGCACTGGGCCAGCTCTTTCCTGATGGATTTTCTCTTTGCAAGCCACACA 310
Query 155830 GTCAACAGACTAGCCAAGAAGGACTCGTGCACGTGCTTCTTCACAAAGTGGTAGACGCCC 155889
|| ||||| | |||| || || | |||||||| || ||||| || | ||||
Sbjct 309 GTTAACAGTTTGGCCAGTAAAGATACAGATACGTGCTTTTTAACAAAATGAACCAGGCCC 250
Query 155890 CCCGTGAGCCTGAAGGACTCATAGTCTTCTCCCGGGCGC----AGGCCGGCTAGCCTGTG 155945
|||| ||| | ||||||||| ||| || | | | || | |||
Sbjct 249 GAGCTGAGGTGGAAAGTCTCATAGTCATCT-----GCACCTAAATGTGGGTGAAGGTGTA 195
Query 155946 CTCTTCTCCCGGCGTTATCATGGTAGAATAACAGAGATTATGAGCCTGAATGATGCTCGG 156005
||||| | || |||| |||||| ||||| || || || ||||| || ||||| ||
Sbjct 194 GA-TTCTCATCG-GTGATCAGGGTAGAGTAACACAGGTTGTGTGCCTGTATAATGCTTGG 137
Query 156006 GTAGAGGCTGGCAAAGTCCACCACCAGAACCGGGGAGTTGTAGAATCC-GGACAGGGGCT 156064
|||||||||||||||||| || || ||||| |||| |||||| ||||| ||| |||||
Sbjct 136 GTAGAGGCTGGCAAAGTCTACTACTAGAACGGGGGTGTTGTAAAATCCAGGAAGTGGGCT 77
Query 156065 GGATGACGGTGGCCCCCTGGTAGCCGTC 156092
||| || ||||| |||||||| || ||
Sbjct 76 -GATAACAGTGGCGCCCTGGTATCCATC 50
>seq1683812
Length=3291
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920
|||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || |
Sbjct 2045 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2104
Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980
|||| |||||||| ||||| | ||| || |||||| || || | || |||| ||||
Sbjct 2105 TGCCGCAGGCTGAGAACCACGGCCCAGACATCAAAGAGCACGTGAGCTCCCTGGGAGAAA 2164
Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008
| || |||| || |||| || |||||
Sbjct 2165 AGCTGAAGAATCTGAGGCTGCGGCTGCG 2192
>seq394708
Length=1234
Score = 107 bits (118), Expect = 2e-18
Identities = 204/296 (69%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 114128 TTTAAGCAAAAAGCCAGCGTGTTTCTTATCCCCAGGCGCCACGGCAAGACCTGGATAGTC 114187
||||| |||||||| || || ||| | || || || | || |||||||||||||| ||
Sbjct 254 TTTAAACAAAAAGCGAGTGTTTTTTTAATTCCTAGAAGGCATGGCAAGACCTGGATTGTT 313
Query 114188 GTGGCCATCATCAGCCTCATCCTCTCGAATCTCT--CCAACGTGCAAATAGGCTACGTGG 114245
|| || ||||||| | | || || | |||| | ||| | || ||||| || ||||
Sbjct 314 GTAGCAATCATCACCATGCTC--CTGGTATCTGTGGAAAACATTCACATAGGGTATGTGG 371
Query 114246 CTCACCAGAAACATGTCGCGTCCGCCGTTTTCACTGAAATTATTGACACCTTG-ACCAAG 114304
| ||||| |||||||| || | | || || || |||||||| | || ||| || ||
Sbjct 372 CCCACCAAAAACATGTTGCCAACTCAGTCTTTACAGAAATTATAAATACTTTGTACAAAT 431
Query 114305 AGCTTCGACTCCAAGCGTGTAGAGGTCAACAAGGAGACCAGCACCATCACGTTTAGGCAC 114364
| ||| | ||| | |||| | || || || | |||| || | | | | |
Sbjct 432 GGTTTCCAACACAA-AATATAGAAATTAAGAAAGAAAATGGCACAATTATCTACAAGAAT 490
Query 114365 AGTGGGAAAATCTCCAGCACCGTAATGTGTGCCACCTGCTTCAATAAGAATGTAAG 114420
| | |||| | ||||| | ||||||||||| ||||||||||||||||||||
Sbjct 491 GGAAGCAAAAGACCAAGCACTTTGATGTGTGCCACATGCTTCAATAAGAATGTAAG 546
>seq399366
Length=1397
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139
||||||| || ||||| | ||||||||||||||||| |||||||| || || |||||||
Sbjct 797 AGCTGCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 856
Query 10140 TAGAAGCATACATGACAATTAA 10161
||||| | ||||||||||| ||
Sbjct 857 TAGAAACCTACATGACAATGAA 878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530391843007200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |