Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2031399 129 6e-25 seq1852988 105 6e-18 seq1731777 98.7 1e-15 seq1715087 98.7 1e-15 seq1799193 93.3 4e-14 seq2677557 84.2 2e-11 seq1730184 84.2 2e-11 seq2929101 82.4 7e-11 >seq2031399 Length=344 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 249 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 190 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| |||| || | ||||| || ||||| Sbjct 189 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 130 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||||| || || || Sbjct 129 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 70 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||| || || | |||||||||||||| ||||| || Sbjct 69 CTCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTT 19 >seq1852988 Length=3013 Score = 105 bits (116), Expect = 6e-18 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || | |||||||||||||| || | || | | Sbjct 2213 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTC----AAAGTACATCC 2158 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 | ||| || |||||||| ||| |||| || | ||||| || |||||||||||||| || Sbjct 2157 ATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 2098 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || |||||| || || || || | ||| | Sbjct 2097 ATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTGAT 2038 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | |||||||||||||| ||||| || Sbjct 2037 GGTCTTCCCTGTAAGGGTTTTTACGAAAATATGCATCTT 1999 >seq1731777 Length=2471 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||||||||| || | | || | | Sbjct 713 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 772 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| || |||||||| ||| |||| || | ||||| || ||| |||||||||| | Sbjct 773 GTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTC 832 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 | || || || |||||| | | ||| || || || || || | ||| | Sbjct 833 ATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTGAT 892 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 |||||| || | | |||||||| ||||| |||||||| || Sbjct 893 GGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTTTGAT 934 >seq1715087 Length=7196 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 7043 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 7102 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || |||||||| || || || || ||| Sbjct 7103 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCTTCTTTATCCTGGATCTTGGCCTTC 7162 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 ||| ||| | || |||| || ||||| || Sbjct 7163 ACATTCTCGATGGTGTCACTGGGCTCCACCTC 7194 >seq1799193 Length=4297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || | |||||||||||||| || | | || | | Sbjct 2091 TCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 2032 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || ||||||| ||| |||| || | || || || |||||||||||||| || Sbjct 2031 ATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCTTCCTT 1972 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || |||||| || || || || | ||| | Sbjct 1971 ATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGAGTGAT 1912 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || || | |||||| |||||| | ||| Sbjct 1911 GGTCTTCCCTGTAAGGATTTTTATGAAAATCTACAT 1876 >seq2677557 Length=202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 64260 GAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCC 64319 |||||||||| || | | ||| | | || || ||| | ||||| ||| | || || | Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65 Query 64320 GCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACT 64378 |||||||||||| || || || || || ||||| | |||| ||||| || ||| | Sbjct 66 ACTGCTGGTCGGG-GGGATGCCCTCCTTGTCTTGGA-TTTTGGCTTTGACGTTCTCGATG 123 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || |||| || ||||| || | || | ||||||||| |||| || || ||||| || Sbjct 124 GTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 183 Query 64439 TGCAT 64443 ||||| Sbjct 184 TGCAT 188 >seq1730184 Length=3170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 |||||||||||||| || | | |||| | | ||| || |||||||| ||| |||| Sbjct 1244 TTTTGAATGTTGTAGTCAGACAAA-TGCGTCCATTTTCCAGTTGCTTGCCAGCAAAAATC 1186 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || | ||||| || ||||||||||||| || || | || || ||||||| || Sbjct 1185 AGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATCCAGGATCTTGGCCTTTACATTTTCT 1126 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | |||||| || || || | | ||| | |||||| || | | ||||||| |||| Sbjct 1125 ATTGTATCCAAGGGTTCAACCTAGAGAGTGATGGTCTTCCCCATAAGGGTTTTTATGAAA 1066 Query 64436 ATTTGCATTTT 64446 || ||||| || Sbjct 1065 ATCTGCATCTT 1055 >seq2929101 Length=1797 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || || |||| || ||||||||||||| | ||||| | || Sbjct 941 AAGCACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATC 1000 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||| || | | | | || || |||||||||| || || ||||| || || || Sbjct 1001 CTCCAGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC 1060 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||| || ||| ||| | || |||| || | || || | |||| ||| Sbjct 1061 TTGGGTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGT 1120 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| |||| || || || || ||| Sbjct 1121 CTTGCCCGTCAGGGTCTTCACCAATATT 1148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479463490744200