Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1995885 181 1e-40
seq1817971 165 1e-35
seq1652618 113 6e-20
seq1566104 107 3e-18
>seq1995885
Length=2464
Score = 181 bits (200), Expect = 1e-40
Identities = 211/285 (74%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| ||||||||||| || ||||| |||||||| | || || || | |||
Sbjct 1435 AAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1376
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| |||||||| || || ||||| ||||| || |||||||| | || || |||||
Sbjct 1375 TTAAAACCTACTTCTCCACCGAAAGTGCTTGGCTTCCAGTAGTCAGGAGAACAGATAGTA 1316
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || | || | ||| ||||||| |||
Sbjct 1315 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1256
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | ||||| || ||||| || | | | ||| || || || | ||| || |
Sbjct 1255 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATA 1196
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||||||||||||||| ||||| || |||||||| |||
Sbjct 1195 TCACCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 1151
>seq1817971
Length=1863
Score = 165 bits (182), Expect = 1e-35
Identities = 171/224 (76%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || || |||||||| ||| ||||||| || || || ||||| || |||||||| ||
Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| ||||||| |||||| || |||||||||||||| | ||| ||||| | ||||||
Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | |||||| ||||| |||| | || || || | || | || | ||| |
Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|||| || |||||||| ||||| ||||||| ||| || |||||
Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAAT 1394
Score = 131 bits (144), Expect = 2e-25
Identities = 135/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| ||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|||||| || |||||||| || | || || || ||||||| || ||||||||||||||
Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | || || ||| |||||||||| | ||||||| || ||
Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 279
>seq1652618
Length=2437
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| || || ||||| || | ||| |||
Sbjct 379 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 438
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||||||||||||||| ||||||||||| | | || ||
Sbjct 439 TAATAGGAGAGGTTAGAAAATGCTTCCCAGCTTTTGTAGCCATAGTGCATATTATAAGTT 498
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | || ||||||
Sbjct 499 GGTGGACTATCAATCAAATGTGATCTGGCT 528
>seq1566104
Length=2510
Score = 107 bits (118), Expect = 3e-18
Identities = 174/248 (70%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || |||| || || | || || || || ||||| || |||||||||
Sbjct 754 GTGGCCGTCTTGACAATGTTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTAC 813
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| ||| | | ||| ||||| | |||||| |||||||| | |||
Sbjct 814 TCTGGAGAACAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCT 873
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || |||||||| || | ||||| | || | |||| | | |
Sbjct 874 ATCATACTCTCCCCAAAGATGGCGTTTGGTAGGCACTTTTCAA-GAAGCAGCCCTGGGAA 932
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || |||| ||| ||||| || | |||| ||| || || |||||||||||
Sbjct 933 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTC 992
Query 9172 ACCTACAA 9179
||| |||
Sbjct 993 TCCTGCAA 1000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694495676187000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |