Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1995885 181 1e-40 seq1817971 165 1e-35 seq1652618 113 6e-20 seq1566104 107 3e-18 >seq1995885 Length=2464 Score = 181 bits (200), Expect = 1e-40 Identities = 211/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 1435 AAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1376 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || ||||| ||||| || |||||||| | || || ||||| Sbjct 1375 TTAAAACCTACTTCTCCACCGAAAGTGCTTGGCTTCCAGTAGTCAGGAGAACAGATAGTA 1316 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| ||||||| ||| Sbjct 1315 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1256 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || | ||| || | Sbjct 1255 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATA 1196 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||||||||||||||| ||||| || |||||||| ||| Sbjct 1195 TCACCATAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 1151 >seq1817971 Length=1863 Score = 165 bits (182), Expect = 1e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || |||||||| ||| ||||||| || || || ||||| || |||||||| || Sbjct 1617 GTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 1558 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||||| |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 1557 CTGTTATGTTCTCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1498 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| |||| | || || || | || | || | ||| | Sbjct 1497 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGACGTGAGGTGGGTAGACCATCTCT 1438 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| ||||||| ||| || ||||| Sbjct 1437 GCCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAAT 1394 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| ||||||||| ||| ||| | || Sbjct 455 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 396 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 395 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 336 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 335 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 279 >seq1652618 Length=2437 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || | ||| ||| Sbjct 379 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 438 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||||||||||||||| ||||||||||| | | || || Sbjct 439 TAATAGGAGAGGTTAGAAAATGCTTCCCAGCTTTTGTAGCCATAGTGCATATTATAAGTT 498 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 499 GGTGGACTATCAATCAAATGTGATCTGGCT 528 >seq1566104 Length=2510 Score = 107 bits (118), Expect = 3e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || ||||| || ||||||||| Sbjct 754 GTGGCCGTCTTGACAATGTTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTAC 813 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| ||| | | ||| ||||| | |||||| |||||||| | ||| Sbjct 814 TCTGGAGAACAGATGGGATTCCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCT 873 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || |||||||| || | ||||| | || | |||| | | | Sbjct 874 ATCATACTCTCCCCAAAGATGGCGTTTGGTAGGCACTTTTCAA-GAAGCAGCCCTGGGAA 932 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||| ||| || || ||||||||||| Sbjct 933 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCCTTCTC 992 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 993 TCCTGCAA 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694495676187000