Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2031399 141 2e-28 seq1731777 134 3e-26 seq3019692 114 3e-20 seq1799193 109 1e-18 seq1715087 107 4e-18 seq1537392 102 2e-16 seq1749026 95.1 3e-14 seq1627958 95.1 3e-14 seq1983535 93.3 1e-13 seq1798963 91.5 3e-13 seq1531189 91.5 3e-13 >seq2031399 Length=344 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 242 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 183 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || || || || | ||||| || ||| ||||||| Sbjct 182 CGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCT 123 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | || || | | ||| || || | Sbjct 122 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 63 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| || ||||| || Sbjct 62 GTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTG 25 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| || || || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 143 AAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 202 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||| ||||| ||||||||||| Sbjct 203 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 242 >seq1731777 Length=2471 Score = 134 bits (148), Expect = 3e-26 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| | Sbjct 710 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 769 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||| |||||||| ||||| || || || || || | ||||| || |||| ||||||||| Sbjct 770 TCCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTC 829 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||| ||||| || || || | ||||| | | ||| || || | || Sbjct 830 CTCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGT 889 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| ||| | || ||||| |||||||| || |||||| Sbjct 890 GATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTG---CATTTT 931 >seq3019692 Length=452 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||||||| |||||||| ||| | ||||||||||| | |||||||||| |||||| | Sbjct 116 GAAGTCTCGACACAAGGTGAAGACTGGACTCCTTTTGAATGTTGTAGTCATACAAAGTAC 175 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || || || | | ||||| || ||| |||||||| Sbjct 176 ATCCATCTTCCAGTTGCTTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTT 235 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || || | | |||| | ||| || | | | Sbjct 236 CCTTATCCTGGATCTTGGCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAG 295 Query 199590 TGATCGTCTTACCC-GTGAGAGTTTTCACAAAAATTTG 199626 |||| | ||| ||| || ||| |||| |||||||| || Sbjct 296 TGATGGCCTTTCCCTGTAAGAATTTTTACAAAAATCTG 333 >seq1799193 Length=4297 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || ||||| |||| |||||| | ||||||||||| |||||| Sbjct 2096 CGAAGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTA 2037 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||| || ||||| | || || || || | || || || ||| ||||||| Sbjct 2036 TGTCCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCT 1977 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || ||| || || | | ||| || || | Sbjct 1976 TCCTTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGA 1917 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || || || |||| | ||||| Sbjct 1916 GTGATGGTCTTCCCTGTAAGGATTTTTATGAAAAT 1882 >seq1715087 Length=7196 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 7028 AGAACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 7087 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || |||||| ||| Sbjct 7088 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCTTCTTTATCC 7147 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| |||||| |||| |||||| Sbjct 7148 TGGATCTTGGCCTTCACATTCTCGATGGTGTC 7179 >seq1537392 Length=19804 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||| || |||| ||||||||||| || || |||||||| || ||| Sbjct 12063 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCACCTG 12004 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| | || |||||| || |||| || ||||| || || ||||| Sbjct 12003 TTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGATCTT 11944 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || | | || || | |||||| | | ||||| || | ||||| ||||| || || Sbjct 11943 TTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCCGGT 11884 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || Sbjct 11883 CAGGGTCTTCACAAAGATCTG 11863 >seq1749026 Length=2417 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||| | ||| ||||||||||| ||||||||||||| |||||| Sbjct 1727 CGAAGTCTCAACACAAAACAAAAAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAAGTA 1668 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||| ||||| || || || || || | ||||||| ||| |||| || Sbjct 1667 TGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGCCTTTGCTGGTTAGGAGGAATTTCT 1608 Query 199529 TC 199530 || Sbjct 1607 TC 1606 >seq1627958 Length=3316 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || ||||| || | || ||||||||||| || || | |||||| Sbjct 306 CAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATC 247 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | |||||| || || || ||||| || Sbjct 246 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTC 187 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || || | |||||| | | || || || | ||||| | Sbjct 186 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGC 127 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 126 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 97 >seq1983535 Length=492 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || ||||| |||||||||| | |||||||||| |||| | Sbjct 229 GAAGTCTCAACACAAGATGAAGAGTGCACTCCTTTTGAATGTTGTAGTCA----AAGTAC 174 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGC--GAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||||||| ||||| || || || || || | ||||| || ||| |||||| Sbjct 173 ATCCATCTTCCAGTTGCTTACCAGCAAAAAAATTAGTCTTTGCTGATCAGGAGGAATTCC 114 Query 199528 TTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| Sbjct 113 TTCCTTATCCTGGATCTT 96 >seq1798963 Length=3269 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||| ||||| | || || ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 1629 GAAATCTCAACATAAAATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGGCAAAGTAT 1688 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||| || ||| ||||| || || ||||| || | ||||| || ||| ||||| ||| Sbjct 1689 ATCCATATTACAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGAAATTTCTT 1748 Query 199530 CTCGCTCCTG--AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||||| || | |||||| ||| | || | | | ||| || || | Sbjct 1749 TCTTATCCTGGAAAGC-----CTTCACATTTTCTATTGTATTGGAGGGTTCAACCTCAAG 1803 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||| | || ||||| ||||||| || Sbjct 1804 AGTGATGGTCTTCCCCATAAGGGTTTTTGCAAAAATCTG 1842 >seq1531189 Length=23303 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||| |||||||| ||||||||||| | ||||||||||| ||||| Sbjct 22457 CGAAGTCTCAACACAAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAGAAAGTA 22398 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| | ||| || || || || || | | ||| | | | ||||||| Sbjct 22397 CATCCATCTTCCAG-TTCTTGCCAGCAAAAATCAGTCTTTACTGATTGGTAGGAATTCCT 22339 Query 199529 TC 199530 || Sbjct 22338 TC 22337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1130112954472435