Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1557410 174 2e-38 seq2677557 107 2e-18 seq2929101 95.1 1e-14 seq1627958 95.1 1e-14 seq1715087 93.3 4e-14 seq1549142 89.7 5e-13 seq2955825 86.0 6e-12 seq1292660 84.2 2e-11 seq1615235 82.4 7e-11 >seq1557410 Length=8730 Score = 174 bits (192), Expect = 2e-38 Identities = 427/644 (66%), Gaps = 19/644 (3%) Strand=Plus/Plus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 || |||| || |||||||||| ||| |||||||| ||| | || ||||| || ||| | Sbjct 6808 TGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTA 6867 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 | ||||| | | || || | ||| ||||| || || | ||| || ||||| ||||| Sbjct 6868 GTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATC 6927 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | || ||| || |||||||||| ||| || || || || || || || | | || Sbjct 6928 GATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCT 6987 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110 ||| | || || |||||| | ||||| | || | ||| || ||||| | ||| Sbjct 6988 CCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACA 7047 Query 133111 CACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC--GAGGAAC--GCAC 133166 || ||||||||||| ||||| || || | || ||| ||| | || | | | Sbjct 7048 CAAGGCATCGTTTCAATGGCATTGAAGA----GAAATTCCCTTTCTTTAGAATCTTTAAT 7103 Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||| || | |||||| | || || | ||| | |||| ||||| || Sbjct 7104 GTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAA 7163 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || || || || | ||| |||||||| | ||| || | |||| || Sbjct 7164 GCCATAGAAACAGTAGGCTT-------CTGAACTTCTTGGCCAAAATGCGCCACCAAGTT 7216 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG--CACGTGCTTGATGAAATGG 133344 || || || ||| ||| || || || || || ||||| |||| | | |||||||| Sbjct 7217 GTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGAT--ATGAAATGT 7274 Query 133345 CGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 | || | ||| | ||||||| |||||||||| || ||||||||||| Sbjct 7275 CTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCC 7334 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATG 133464 | |||||||| || | ||| ||||| || ||||| | ||| || || |||| || Sbjct 7335 GCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATA 7394 Query 133465 GGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || || ||||| | |||||||||| | || ||| || || Sbjct 7395 GGGAAGATGACAAAGTGCTGGGGGTTTTCTCTCAGCAGTGGTTC 7438 >seq2677557 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 136/183 (74%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 188 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 129 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| ||||| || ||| ||||||| Sbjct 128 GACACCATCGAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCC-CCGACCA 71 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || ||||||| |||||| || | | ||| || ||||||||| Sbjct 70 GCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAA 11 Query 38423 CAT 38425 ||| Sbjct 10 CAT 8 >seq2929101 Length=1797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38249 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAG 38308 |||||| || || || || |||||||| ||||| ||| | || ||| || ||| |||| Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCAAGTCCAGTGACAC 1089 Query 38309 CGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | | | | |||| |||| || ||||| |||||||| || | ||||| |||| Sbjct 1088 CATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAGCA 1029 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 || || | ||| ||||||||||| || | ||||| || || ||||||||||| Sbjct 1028 TCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATCCA 969 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCT 38455 | || | || ||||| ||||||| Sbjct 968 GGAAGAGTCCACTCTGCACCTGGTGCT 942 >seq1627958 Length=3316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || |||||| ||| Sbjct 94 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAGT 153 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| || || || ||| | || || Sbjct 154 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCAG 213 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | |||||| | ||||||||| Sbjct 214 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAAC 273 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || | || ||||| ||||| || | || || || || Sbjct 274 ATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGG 320 >seq1715087 Length=7196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || ||||| || || ||| ||||||| ||| ||||||| | || ||||| Sbjct 7155 AAGATCCAGGATAAAGAAGGGATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG 7096 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || |||||||||||||| || || | || ||||| Sbjct 7095 CAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTGCAC 7036 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||| |||| || ||| Sbjct 7035 CTGGTTCTCCGTCTGAGGGGTGGC 7012 >seq1549142 Length=19220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| || Sbjct 14561 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGAGCTCAGT 14502 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||||| ||||||| |||| ||||| || || | |||| Sbjct 14501 GATATCATTGAGAATGTCAAAGACAAAATCCAAAACAAGGAGGGCATCCCACCTGACCTG 14442 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | ||||||||||||||||| || | | ||| || |||||| || Sbjct 14441 CAGTGTCTGATATTTGCGGGCAAACAGCTGGAAGATGGCCACACTCTTTTAGACTACGAC 14382 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | ||| || || | | ||||| ||||||| Sbjct 14381 ACCCAGAAAGAGTCCAGCCTGCACCTGGTGCT 14350 >seq2955825 Length=1785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 38283 ACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAA 38341 ||| | || ||| || ||| |||||| || | |||| | |||| ||||||| | ||| Sbjct 1 ACCCTTGAGGTCAAGCCCAGTGACAGCATGGAGAACG-TCAAAGCCAAAATCCAAGGCAA 59 Query 38342 AGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGA 38401 ||||| || || | |||| ||||| || || | || |||||||||||||| || | Sbjct 60 GGAGGGCATCCCACCTCACCAGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGG 119 Query 38402 GCGCAC-CCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTT 38460 |||| | || |||||||||||||| || || | || |||| ||||||| | Sbjct 120 CTGCACTCGTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCTGCTGGTGCTTCACC 179 Query 38461 TGAGAGGCGGC 38471 || |||||||| Sbjct 180 TGCGAGGCGGC 190 >seq1292660 Length=282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-TGCAAACGCTTAAAGAAAA 38329 ||||| ||||||||| |||| ||| || ||| |||| | || || | | || | || Sbjct 281 GGCAAGACCATCACCCTCGAGGTCAAGCCCAGTGACACCACTGAGAATG-TCAAGGCCAA 223 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||| | | ||| ||||| || || ||||||||| | || || | || |||||||| Sbjct 222 AATTCAAGCCAAGGAGGGCATCCCACTTGACCAACAGTGTCTGATATTTGCAGGCAAACA 163 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||||| || | ||||| ||| |||| ||||||||| || || | | ||||| | Sbjct 162 GCTGGAGGATGGCCGCACTCTCTCAGACTGCAACATCCAGAAAGAGTCCATCCTGCACCT 103 Query 38450 GGTGCTGC 38457 || ||||| Sbjct 102 GGGGCTGC 95 >seq1615235 Length=3244 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 ||||||||| | |||||||| || ||||||||||| || ||||| ||| || || Sbjct 288 ACCTCCTCGGCCGTCCAAAAGGAAGCCTCGGCTTTCTTATACATTTGCCAAATATCATGG 229 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||| || ||||| || ||||| ||| |||||||||| | || ||| || || Sbjct 228 TATTCGATAGGAAAGATGACAAAGCGGTGGGGGTTTTCTCTCAGCAGTGGTTC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479970164131200