Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2031399 145 2e-29 seq1799193 129 1e-24 seq1852988 123 5e-23 seq1731777 113 1e-19 seq1627958 113 1e-19 seq2929101 107 4e-18 seq3019692 104 5e-17 seq2677557 100 6e-16 seq1537392 98.7 2e-15 seq2955825 89.7 1e-12 seq1585181 89.7 1e-12 seq1531189 87.8 4e-12 seq2603436 84.2 5e-11 seq1798963 84.2 5e-11 seq1638757 84.2 5e-11 >seq2031399 Length=344 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 239 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 180 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || |||| ||| || || |||||||| ||||| Sbjct 179 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 120 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || || || Sbjct 119 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 60 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||||||||| | ||||| Sbjct 59 ATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 22 >seq1799193 Length=4297 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||||||||||| |||||||| ||||| || | | ||| Sbjct 2093 AGTCTCAACACAAGATGAAGAGTGGACTTCTTTTGAATGTTGTAGTCAGACAAAGTATGT 2034 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| | || || || |||| |||||| || |||||||| ||||| Sbjct 2033 CCATCTTCTAGTTGCTTGCAAGCAAAAATTAGTCTTTGTTGATCAGGAGGAATTCCTTCC 1974 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || ||||| || ||| || || || | || ||||| ||| || ||||| || Sbjct 1973 TTATCCTGAATCTTGGCCTTTACATTTTCTCTTGTATCCGAGGGTTCAACCTCAAGAGTG 1914 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| ||||| | |||||| ||| Sbjct 1913 ATGGTCTTCCCTGTAAGGATTTTTATGAA 1885 >seq1852988 Length=3013 Score = 123 bits (136), Expect = 5e-23 Identities = 171/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||| | |||||||| ||||| || | ||| | Sbjct 2215 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTC----AAAGTACAT 2160 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||| ||| || ||||| || || || || |||| ||| || || |||||||| ||||| Sbjct 2159 CCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 2100 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || || || ||| || || || || Sbjct 2099 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAACCTCGAGAGTG 2040 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTGGTTC 195160 | ||||| ||||| | ||||||||||| | ||||| | ||| ||||||||| Sbjct 2039 ATGGTCTTCCCTGTAAGGGTTTTTACGAAAATATGCATCT-TGG-----TGGTGGTTC 1988 >seq1731777 Length=2471 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 711 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 770 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || ||||| || || || || |||| ||| || || ||| |||| ||||| Sbjct 771 CCGTCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAGAATTCCTTCC 830 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 | | || || || || || || | || |||||||| ||| || || || || Sbjct 831 TCATACTGGATCTTGGCTTTTACATTTTATATTGTGTCCGAGGGTTCAACCTCGAGAGTG 890 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || | | |||||||| || | ||||||| Sbjct 891 ATGGTCTTCCCCATAAGGGTTTTTACAAAAATCTGCATTT 930 >seq1627958 Length=3316 Score = 113 bits (124), Expect = 1e-19 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 |||| | ||| || | ||| || ||||||||||| | || ||||| || | | || Sbjct 314 CTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTG 255 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||| || || || ||||| | | || || || || || |||||| Sbjct 254 CGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCT 195 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || |||||||| || ||| |||||| |||||||||||||| ||| || |||||| Sbjct 194 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACTTCA 138 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | | ||| || |||| || || || || | ||||| Sbjct 137 AGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2929101 Length=1797 Score = 107 bits (118), Expect = 4e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||||| || || |||||||| | |||||| | ||||| || Sbjct 945 ACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTCC 1004 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||| | | || || || | || ||||| || || || || || |||||||| Sbjct 1005 AGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGG 1064 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 |||| ||||| ||||| ||||||| | | |||| || |||||||| | |||| Sbjct 1065 GTTTTGACTTTGACATTCTCGATGGTGTCACTGGACTT--GACCTCAAGGGTTATGGTCT 1122 Query 195110 TTCCTGTCAAAGTTTTTACGAA 195131 | || |||| || || || || Sbjct 1123 TGCCCGTCAGGGTCTTCACCAA 1144 >seq3019692 Length=452 Score = 104 bits (114), Expect = 5e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||| | |||||||||||| ||||||| |||||||| ||||| || | ||| | Sbjct 118 AGTCTCGACACAAGGTGAAGACTGGACTCCTTTTGAATGTTGTAGTCATACAAAGTACAT 177 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || | || ||| || || |||||||| ||||| Sbjct 178 CCATCTTCCAGTTGCTTGCCAGCAAAAATCACTCTTTGCTGATCAGGAGGAATTCCTTCC 237 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || | || | || || ||| || | || || Sbjct 238 TTATCCTGGATCTTGGCCTTTACATTTTGTATTATATCTGAGGGTTCAACCTTGAGAGTG 297 Query 195103 ACCGTCTTT-CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | |||| ||||| | | ||||||| || | ||||| Sbjct 298 ATGGCCTTTCCCTGTAAGAATTTTTACAAAAATCTGCAT 336 >seq2677557 Length=202 Score = 100 bits (110), Expect = 6e-16 Identities = 136/187 (73%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 194957 GAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTC 195016 |||| ||||| |||| |||||| ||||| || ||| | || ||||| || || || | Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65 Query 195017 GTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGG 195076 || ||||| || ||| |||| || |||||||| ||||| ||||||||||| |||| Sbjct 66 ACTGCTGGTCGGGGGGA-TGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGG 124 Query 195077 TGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACA 195133 |||| ||| ||||| || ||||| | ||||| || |||| || || ||||| | Sbjct 125 TGTC---ACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGA 181 Query 195134 CTTGCAT 195140 ||||| Sbjct 182 TCTGCAT 188 >seq1537392 Length=19804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || ||||| || | || || ||||||| | ||| Sbjct 12063 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCACCTG 12004 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | | || || || ||| | |||||||| |||||||| || || Sbjct 12003 TTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGATCTT 11944 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || | |||| |||||||||||||| || || || ||||| | ||||| || || Sbjct 11943 TTCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCCGGT 11884 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 11883 CAGGGTCTTCACAAAGATCTGCAT 11860 >seq2955825 Length=1785 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAA-GAGTTCTCCCATCTTCGAGCTGCTT 194999 || ||||||||||| || || ||||| || | | |||| | ||||| || ||||| || Sbjct 162 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGACGAGTGCAGCCATCCTCCAGCTGTTT 103 Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||||| || || || || || |||| || || ||||| || ||| |||| ||||| Sbjct 102 GCCTGCAAATATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGCCTTGGATTTTGGC 43 Query 195060 CTTGACGTTCTCAATGGTGTC 195080 ||||||||||| ||| |||| Sbjct 42 TTTGACGTTCTCCATGCTGTC 22 >seq1585181 Length=9560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| ||||| | ||||||||||||||| |||| ||||| || | |||| ||| Sbjct 3382 CTCAACACAAGATAAAGAGTGGACTCTTTCTGAACTTTGTAGTCAGATAGAGAATGTCCA 3441 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| || | || || || ||| | ||| ||| || || |||||||| |||| || Sbjct 3442 TCTTCTAGTTATTTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTTCCTTA 3501 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||| || || ||| || || || | || ||| | ||| | | || || | Sbjct 3502 TCTTGGATCTTGGCCTTTACATTGTCTTTTGTATCCAAGAGTTCAGCCTTGAGAGTGATG 3561 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| | ||||||| ||| | ||||||| Sbjct 3562 GTTTTCCCTGTAAGGGTTTTTATGAAAATCTGCATTT 3598 >seq1531189 Length=23303 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| |||| || ||||||||||| |||||||| ||||| || | | ||| | Sbjct 22454 AGTCTCAACACAAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAGAAAGTACAT 22395 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || | ||| || || || || |||| || || | | |||||| ||||| Sbjct 22394 CCATCTTCCAG-TTCTTGCCAGCAAAAATCAGTCTTTACTGATTGGTAGGAATTCCTTCC 22336 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | | || | ||| || ||||| | || |||||| ||| || | || || Sbjct 22335 TTACCCTAGATCTCAGCCTTTACATTCTCTGTTGTATCCGAAGATTCAACGTTGAGAGTG 22276 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || | | ||||||||| | ||||| Sbjct 22275 AGGATCTTCCCCGTAAGGGCTTTTACGAAAATATGCAT 22238 >seq2603436 Length=347 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/209 (68%), Gaps = 10/209 (5%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| |||| | ||| || ||||| |||||||| ||||| || | ||||| | Sbjct 217 AGTCTCAACCCAAGATAAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGT 158 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || |||| || || | ||| ||| ||| || || |||||||| ||| Sbjct 157 CCATCTTCCAGTTGCTGGCCAGCAAGGATCCGTCTTTGCTGATCAGGAGGAATTCCT--- 101 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 | ||||| ||| || || || || ||||| || ||| || | ||||| Sbjct 100 -------GGATTTTGGCCTTTACCTTTTCTATTGTGTCTGAGGGTTCAACCTTGAGGGTG 48 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||| || | | ||||||||||| Sbjct 47 GTGGTCTTCCCCGGAAGGGTTTTTACGAA 19 >seq1798963 Length=3269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCC 194983 |||||| | || ||||||||||||||||||||||| ||||| || ||||| ||| | Sbjct 1633 TCTCAACATAAAATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGGCAA-AGTATATC 1691 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 ||| || || ||||| || || ||||| |||| ||| || || |||| ||| ||||| Sbjct 1692 CATATTACAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGAAAT---TTCTT 1748 Query 195044 T 195044 | Sbjct 1749 T 1749 >seq1638757 Length=5346 Score = 84.2 bits (92), Expect = 5e-11 Identities = 166/242 (69%), Gaps = 19/242 (8%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT-TCT 194981 |||||| | ||||| |||||||||||||| |||||||| || || || | | ||| ||| Sbjct 1552 AGTCTCGACACAAGATGAAGAGTGGACTCCTTTTGAATGTTATAGTCAGACAAAGTGTCT 1493 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||| || | ||| || || ||||| ||| || |||||||| ||||| Sbjct 1492 -GGATCTTCCAGTTTCTTGCCAGCAAAGATCGGTC--------TCAGGAGGAATTCCTTC 1442 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA---ACTTTCCACTTCAAG 195098 || || ||||| | ||| || || || | || ||||| ||| |||||||| Sbjct 1441 CTTATCCTGAATCTCGGCCTTTACATTTTCTTTTGTATCCGAGGGTGGTTCAACTTCAAG 1382 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTGGT 195158 || | | ||| ||||| | |||||| ||| | ||||| | ||| ||||||| Sbjct 1381 AGTGATAGCCTTCCCTGTAAGGATTTTTATGAAAATCTGCATCT-TGG-----TGGTGGT 1328 Query 195159 TC 195160 || Sbjct 1327 TC 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1063547846530935