Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1627958 120 2e-22 seq2677557 107 1e-18 seq1549142 95.1 8e-15 seq1537392 93.3 3e-14 seq2929101 86.0 4e-12 >seq1627958 Length=3316 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| || | ||| |||||||| | ||| ||||||| ||||| ||||| || Sbjct 320 CCTCCCCTGAAGCACAAGACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAC 261 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | ||| |||| ||||||||||| |||||||| || | | ||||| || | || Sbjct 260 ACGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGG 201 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 200 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 143 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||| || || || || |||||||||||||||||||| Sbjct 142 CTTCAAGGGTGATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2677557 Length=202 Score = 107 bits (118), Expect = 1e-18 Identities = 138/189 (73%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 |||| ||||||| ||||| ||||| | | |||| |||||| |||| || |||||||| Sbjct 1 TTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATAT 60 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGC 34912 || | |||||||| | || | ||||||||||| || || ||||||| | Sbjct 61 CAGACACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTC 119 Query 34913 TATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | |||| || ||| || |||| ||| ||||| || || || || |||||||| || Sbjct 120 GATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAA 179 Query 34973 GATCTGCAT 34981 ||||||||| Sbjct 180 GATCTGCAT 188 >seq1549142 Length=19220 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||| ||||| |||| | | |||| ||||||||||| || |||||| Sbjct 14371 TCTTTCTGGGTGTCGTAGTCTAAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCCGCAAAT 14430 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||| |||| | || | |||||||||| || || | |||||| || Sbjct 14431 ATCAGACACTGCAGGTCAGGTGGGATGCCCTCCTTGTTTTGGATTTTGTCTTTGAC--AT 14488 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | ||| |||| | ||| || || | ||| ||||| || || || || ||||||| Sbjct 14489 TCTCAATGATATCACTGAGCTCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTCTTCA 14548 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 14549 CAAAGATCTGCAT 14561 >seq1537392 Length=19804 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 34775 CAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAG 34834 |||||| | ||| |||||||| ||||| ||||| || ||| | || |||| | || Sbjct 12066 CAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCAC 12007 Query 34835 CTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 |||||| || ||||| || | | ||||| || | | | || |||||||| || Sbjct 12006 CTGTTTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGAT 11947 Query 34895 CTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||| | |||| || || || | ||| || ||| || |||| ||| ||||| || Sbjct 11946 CTTTTCCATGAC--ATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTG 11889 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 11888 CCGGTCAGGGTCTTCACAAAGATCTGCAT 11860 >seq2929101 Length=1797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||| ||| ||||| || || ||||| | || |||| ||| Sbjct 945 ACCAGGTGCAGAGTGGACTCTTCCTGGATGTTGTAATCTGAAAGAGTGCGGCCATCCTCC 1004 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| | | |||||| || | |||||||| | || | ||||||||||| Sbjct 1005 AGCTGTTTATCCGAAAATATCAGATGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGG 1064 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || || | |||| || || || || | ||||||||| | Sbjct 1065 GTTTTGACTTTGAC--ATTCTCGATGGTGTCACTGGACTTGACCTCAAGGGTTATGGTCT 1122 Query 34951 TTCCCGTGAGAGTCTTCACAAAGAT 34975 | ||||| || |||||||| || || Sbjct 1123 TGCCCGTCAGGGTCTTCACCAATAT 1147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 311849032244040