Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 298 6e-76
seq1615235 123 3e-23
seq1769580 114 1e-20
seq1700391 111 2e-19
seq1599774 102 9e-17
seq2307158 82.4 8e-11
>seq1557410
Length=8730
Score = 298 bits (330), Expect = 6e-76
Identities = 643/943 (68%), Gaps = 25/943 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAA-TCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCAT 18668
|||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 6481 TTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCAT 6538
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| ||| ||| | | ||||| || |||||||| || || ||||| || | ||| |||
Sbjct 6539 CCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATT 6598
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||||| ||||||||||||| ||| | | || |||| || | ||| |
Sbjct 6599 CTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGCCT 6658
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCA--CAATT-CATTCCTAT 18845
||||| || || ||||| | || || | ||| || || ||||| ||| | |
Sbjct 6659 AAGTCTGTCTGCCACAAACTCAACGTACTGCTCCAT--TAACATGCAATTTCATCGCAAA 6716
Query 18846 -TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA 18904
| || | ||| || || || || ||||| || |||||||| | || || | || ||
Sbjct 6717 GTGCTTCACCAGCAAG-GCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCAT-TGCTA 6774
Query 18905 -TAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACAT 18963
| || | ||||| | || || || || || ||||| ||||||| ||
Sbjct 6775 ATTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAG 6834
Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023
||||| |||||| ||| ||||| ||||| || | | ||||| |||||||| | |||
Sbjct 6835 GCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCA 6894
Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083
||||||||||||| ||| |||| ||||||||| || ||||| | ||||||||||| ||
Sbjct 6895 GGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATG 6954
Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143
||||| ||||| ||||| || || | |||||| || |||| || || | ||||
Sbjct 6955 CCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATC 7014
Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203
|| || | |||||| |||||| | | ||||| ||||| || || || | ||| ||
Sbjct 7015 CAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAG 7074
Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263
||| | | || | | |||||||| || | || || || | ||| ||||| |
Sbjct 7075 AGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTA 7134
Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323
||||| || |||| | | || || || || || || ||||| ||||||| | | |
Sbjct 7135 GAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTG--AAC--T 7190
Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
||| | |||||| | ||||| || ||||| ||| | | ||||| ||||||||
Sbjct 7191 TCTTGGC--CAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAG 7247
Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT--GTATTCCAATCAT 19441
|| || | ||| | || ||||| | || ||| ||| | | | | ||| | |
Sbjct 7248 AAAGCCAGAACACGAGATATGAAATG--TCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCT 7305
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
||| || || || | ||| || || || | |||||||| |||| ||| ||||| ||||
Sbjct 7306 AAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTAT 7365
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||| ||| |||||| | |||| ||||| || || |||||
Sbjct 7366 ACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 2993 CTACAACACGTTCTCC 2978
>seq1769580
Length=2278
Score = 114 bits (126), Expect = 1e-20
Identities = 114/146 (78%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 1471 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 1414
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||||||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 1413 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 1354
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 1353 TCCATAAAGTCAAATGGATTTTCTAC 1328
>seq1700391
Length=5054
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| || || || || | |||||| ||||| || | |||||||| || ||||| || |||
Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 3359 ACCACTCTTTCCCC 3372
>seq1599774
Length=14829
Score = 102 bits (112), Expect = 9e-17
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || |
Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| || |||||||| | | || |
Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || |||||||| |||||||||| ||| || | ||| || ||
Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 8821
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || || ||||| || |||| || || || || || ||||| || ||
Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 6480 TTTCTTATACCATA 6467
>seq2307158
Length=1450
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| |||||| ||||||| |||| || | | |||
Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
||||||||||| ||| ||| || || || || || |||| |||||| | ||| |||
Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| || |||||||||
Sbjct 191 ATATGCTGTGGTCTTTCA 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539404487800200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |