Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1557410 298 6e-76 seq1615235 123 3e-23 seq1769580 114 1e-20 seq1700391 111 2e-19 seq1599774 102 9e-17 seq2307158 82.4 8e-11 >seq1557410 Length=8730 Score = 298 bits (330), Expect = 6e-76 Identities = 643/943 (68%), Gaps = 25/943 (3%) Strand=Plus/Plus Query 18612 TTAAAAA-TCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCAT 18668 |||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 6481 TTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCAT 6538 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||| ||| | | ||||| || |||||||| || || ||||| || | ||| ||| Sbjct 6539 CCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATT 6598 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | || |||| || | ||| | Sbjct 6599 CTCCATAAAGTCAAATGGATTTTCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGCCT 6658 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCA--CAATT-CATTCCTAT 18845 ||||| || || ||||| | || || | ||| || || ||||| ||| | | Sbjct 6659 AAGTCTGTCTGCCACAAACTCAACGTACTGCTCCAT--TAACATGCAATTTCATCGCAAA 6716 Query 18846 -TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA 18904 | || | ||| || || || || ||||| || |||||||| | || || | || || Sbjct 6717 GTGCTTCACCAGCAAG-GCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCAT-TGCTA 6774 Query 18905 -TAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACAT 18963 | || | ||||| | || || || || || ||||| ||||||| || Sbjct 6775 ATTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAG 6834 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||| |||||| ||| ||||| ||||| || | | ||||| |||||||| | ||| Sbjct 6835 GCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCA 6894 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||||||||||| ||| |||| ||||||||| || ||||| | ||||||||||| || Sbjct 6895 GGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATG 6954 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| ||||| ||||| || || | |||||| || |||| || || | |||| Sbjct 6955 CCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATC 7014 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || | |||||| |||||| | | ||||| ||||| || || || | ||| || Sbjct 7015 CAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAG 7074 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||| | | || | | |||||||| || | || || || | ||| ||||| | Sbjct 7075 AGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTA 7134 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| || |||| | | || || || || || || ||||| ||||||| | | | Sbjct 7135 GAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTAGGCTTCTG--AAC--T 7190 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||| | |||||| | ||||| || ||||| ||| | | ||||| |||||||| Sbjct 7191 TCTTGGC--CAAAAT-GCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAG 7247 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT--GTATTCCAATCAT 19441 || || | ||| | || ||||| | || ||| ||| | | | | ||| | | Sbjct 7248 AAAGCCAGAACACGAGATATGAAATG--TCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCT 7305 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||| || || || | ||| || || || | |||||||| |||| ||| ||||| |||| Sbjct 7306 AAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTAT 7365 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| ||| |||||| | |||| ||||| || || ||||| Sbjct 7366 ACATTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 2993 CTACAACACGTTCTCC 2978 >seq1769580 Length=2278 Score = 114 bits (126), Expect = 1e-20 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 1471 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 1414 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 1413 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 1354 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 1353 TCCATAAAGTCAAATGGATTTTCTAC 1328 >seq1700391 Length=5054 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || || | |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 3359 ACCACTCTTTCCCC 3372 >seq1599774 Length=14829 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| || |||||||| | | || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| |||||||||| ||| || | ||| || || Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 8821 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| || |||| || || || || || ||||| || || Sbjct 6600 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 6541 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 6540 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 6481 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 6480 TTTCTTATACCATA 6467 >seq2307158 Length=1450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| |||| || | | ||| Sbjct 311 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 252 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| || || || || || |||| |||||| | ||| ||| Sbjct 251 TATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCTACAGATACTCTCATCAAC 192 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 191 ATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539404487800200