Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1563356 197 2e-45 seq1560056 192 7e-44 seq226115 158 1e-33 seq2943252 141 1e-28 seq956339 114 2e-20 seq1758104 91.5 2e-13 seq1869699 89.7 6e-13 seq1873982 87.8 2e-12 >seq1563356 Length=12485 Score = 197 bits (218), Expect = 2e-45 Identities = 238/324 (73%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||||| || || |||||||| ||||| Sbjct 8298 GTTTCACAAAACAGCTCAACCCCATTGATGATGAATGGAGTTCTGGGGGAGTCGGTAACT 8357 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || ||| || | ||||| | ||| |||||| | || |||||||||||| | ||| || Sbjct 8358 CTTCCCTTGAAGTTTCCTGTGGGAGAGAAGGTTGAGGCCATCACCTGGCTTTGCAATGGA 8417 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||||||| || || ||| ||||| || || |||||| | |||||| Sbjct 8418 ACATCTATCGCCTTCATAAAGCCAGAGGAAGCCAAAAGTCCATTCATCCACATGACCAAT 8477 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| ||| ||||||| | |||||| |||||||||||| | || || |||| ||| Sbjct 8478 CCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTGCATCTCAGCAGCCTG 8537 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||| |||||| || | ||||| |||| ||| || | ||||| | || | || Sbjct 8538 ACAATGGCAGACACAGGATTTTACAGCGCCCAGATAACCACAGAGACTTCTGTAACACTT 8597 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 || || ||||| |||||||||||| Sbjct 8598 TCTAGTTACACTCTGAGGATCTTC 8621 >seq1560056 Length=6845 Score = 192 bits (212), Expect = 7e-44 Identities = 239/325 (74%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 ||||| |||| ||| | ||||| |||| ||||||||||| || |||||||| ||||| Sbjct 2078 GTCTCACAAAACAGACCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 2019 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | ||||| | ||| ||||| | || |||||||||||| | ||| || Sbjct 2018 CTTCCCCTGAAGTTTCCTGTGGGACAGAAGGTTGAGGCCATCACCTGGCTTTGCAATGGA 1959 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||||||| || || ||| ||||| || || |||||| | | || | Sbjct 1958 ACATCTATCGCCTTCATAAAGCCAGAGGAAGCCAAAAGTCCATTCATCCACATGATCAGT 1899 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| ||| ||||||| | |||||| |||||||||||| | || || |||| || Sbjct 1898 CCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTGCATCTCAGCAGTCT- 1840 Query 2118 GAGA-TGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGT 2176 || | ||| |||||| || || |||||||||| || || | |||| | | || | | Sbjct 1839 GACAGTGGCAGACACAGGATCTTACAGTGCCCAAATAACCACAGAGATCTCTGTAACACT 1780 Query 2177 TTCCAGCTACACGCTGAGGATCTTC 2201 | |||| ||||| |||||||||||| Sbjct 1779 TGCCAGTTACACTCTGAGGATCTTC 1755 >seq226115 Length=335 Score = 158 bits (174), Expect = 1e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1977 ATCACCTGGCACTACAACGGCACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGC 2036 ||||| |||| | ||| || || || | ||||| || | ||||| || || | || Sbjct 1 ATCACTTGGCTTTGCAATGGAACATCTCTTGCCTTCATAGAACCCTCTGAAACCGAAAGT 60 Query 2037 CCCCAGATCCACCTAACCAATCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTAC 2096 || | |||||| | || |||| |||| | | |||||||| |||||||| ||||||||| Sbjct 61 CCAAAAATCCACGTGACTCATCCTAAACAGCGAAAGCGACTGAACTTCACCCAGTCCTAC 120 Query 2097 TCCCTACAACTGAGCAACCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCC 2156 ||||| |||| |||||||| |||||||||||||| || || ||| |||||| ||| || Sbjct 121 TCCCTGAAACTCAGCAACCTGGAGATGGAAGACACAGGCTCTTACGGTGCCCAGATAACC 180 Query 2157 TCCGAGACCACAGTTAACGTTTCCAGCTACACGCTGAGGATCTTC 2201 | |||||| | || || | ||||| ||||| |||||||| ||| Sbjct 181 ACAGAGACCTCTGTAAAGCTGTCCAGTTACACTCTGAGGATATTC 225 >seq2943252 Length=1094 Score = 141 bits (156), Expect = 1e-28 Identities = 189/262 (72%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 || ||| |||||| || || | | |||||||| ||| ||| ||| ||| ||| |||| Sbjct 649 AATTGAGGAACATACAAGTTACTAGTCACAGTCGACTATCTGGGAACAGGACCTGTGAGA 708 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||| |||||||| ||||| | |||||| ||||||| |||| |||| ||| ||| || Sbjct 709 TCCACCTGACCTGCTCTGTGGCGGATCCAGATGACAATGTCTCATTCAGGTGGCAGGTCT 768 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 || || | ||||| | || || |||||||| | ||||||||||||| || || Sbjct 769 CAGGAAACATACTTCTGAGTGAACCAAACCTCACTATCTCCTGGGACCCCGAAAATTCCA 828 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGC---TGTGAGCAATCTCTCTTTCACGG 2442 |||| || |||||||| || | | || ||| | | |||||| | || ||| | | Sbjct 829 GTGAACAAAACTACACCTGTGTAGTTGAGAACCCCATCGGCAGCAATTTATCCTTCTCTG 888 Query 2443 TCTCGGCCCAGAAGCTGTGTGA 2464 |||| ||||||| ||| || || Sbjct 889 TCTCTGCCCAGAGGCTCTGCGA 910 >seq956339 Length=218 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 2043 ATCCACCTAACCAATCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTA 2102 ||||| | |||||||| ||| ||| ||||||| | |||||| |||||||||||| | Sbjct 190 ATCCATGTGACCAATCCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTG 131 Query 2103 CAACTGAGCAACCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAG 2162 || || |||||||| ||||| |||||| || || ||||| |||| |||| || ||| Sbjct 130 CATCTCAGCAACCTGACGATGGCAGACACAGGATCTTACAGCGCCCAGATGACCATAGAG 71 Query 2163 ACCACAGTTAACGTTTCCAGCTACACGCTGAGGATCTT 2200 ||| | | | ||||||||||||| |||| ||||| Sbjct 70 ACCTCTATAACACTTTCCAGCTACACTCTGAATATCTT 33 >seq1758104 Length=3047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| ||||||||||| || || | |||| Sbjct 1065 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 1006 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || | || || || || | || || | |||||||||| || Sbjct 1005 GCCCACTTCTGGAAGGTTCTATTCCCTGCAGGCCTGGTCTCCACAAGCTCTGTATCCTGG 946 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || ||||| | ||| || | |||| || || || || || |||| Sbjct 945 GTCTGGTCCTCCCCATCTCGCTGCCAAGTCAGCGTTATCTCCGCAGGGTAGAAGCCCAGG 886 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 885 GCCCAGCACC 876 >seq1869699 Length=957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 ||||||||||| ||| ||||||||||| || || | ||| |||| || || || || Sbjct 7 CATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCCGCCCACTTCTGGAAGGTT 66 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 ||||| || || || | || || | ||||||| || ||| |||| || ||||| || Sbjct 67 CCATCCCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGAGTTTGGTCCTCTCCATCC 126 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 | | ||| || | | | || || || || || || |||| |||||||||| Sbjct 127 CTTTCCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 178 >seq1873982 Length=1919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236 ||| ||||| || || | ||||||||||| ||| ||||||||||| || || | ||| Sbjct 1075 GCCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGC 1134 Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296 | |||| || || || || || || || || || | || || | ||||||| || || Sbjct 1135 TGCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTG 1194 Query 14297 ACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAA 14356 | || || || || || || | ||| || | | | || || || || || || |||| Sbjct 1195 GGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAG 1254 Query 14357 AGCCCAGCACC 14367 |||||||||| Sbjct 1255 GGCCCAGCACC 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603865625617800