Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq1563356 197 2e-45
seq1560056 192 7e-44
seq226115 158 1e-33
seq2943252 141 1e-28
seq956339 114 2e-20
seq1758104 91.5 2e-13
seq1869699 89.7 6e-13
seq1873982 87.8 2e-12
>seq1563356
Length=12485
Score = 197 bits (218), Expect = 2e-45
Identities = 238/324 (73%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| ||||||| || || |||||||| |||||
Sbjct 8298 GTTTCACAAAACAGCTCAACCCCATTGATGATGAATGGAGTTCTGGGGGAGTCGGTAACT 8357
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| ||| || | ||||| | ||| |||||| | || |||||||||||| | ||| ||
Sbjct 8358 CTTCCCTTGAAGTTTCCTGTGGGAGAGAAGGTTGAGGCCATCACCTGGCTTTGCAATGGA 8417
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || |||||||| || || ||| ||||| || || |||||| | ||||||
Sbjct 8418 ACATCTATCGCCTTCATAAAGCCAGAGGAAGCCAAAAGTCCATTCATCCACATGACCAAT 8477
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| ||| ||| ||||||| | |||||| |||||||||||| | || || |||| |||
Sbjct 8478 CCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTGCATCTCAGCAGCCTG 8537
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
|||| |||||| || | ||||| |||| ||| || | ||||| | || | ||
Sbjct 8538 ACAATGGCAGACACAGGATTTTACAGCGCCCAGATAACCACAGAGACTTCTGTAACACTT 8597
Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201
|| || ||||| ||||||||||||
Sbjct 8598 TCTAGTTACACTCTGAGGATCTTC 8621
>seq1560056
Length=6845
Score = 192 bits (212), Expect = 7e-44
Identities = 239/325 (74%), Gaps = 2/325 (1%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
||||| |||| ||| | ||||| |||| ||||||||||| || |||||||| |||||
Sbjct 2078 GTCTCACAAAACAGACCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 2019
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||| | ||||| | ||| ||||| | || |||||||||||| | ||| ||
Sbjct 2018 CTTCCCCTGAAGTTTCCTGTGGGACAGAAGGTTGAGGCCATCACCTGGCTTTGCAATGGA 1959
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || |||||||| || || ||| ||||| || || |||||| | | || |
Sbjct 1958 ACATCTATCGCCTTCATAAAGCCAGAGGAAGCCAAAAGTCCATTCATCCACATGATCAGT 1899
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| ||| ||| ||||||| | |||||| |||||||||||| | || || |||| ||
Sbjct 1898 CCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTGCATCTCAGCAGTCT- 1840
Query 2118 GAGA-TGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGT 2176
|| | ||| |||||| || || |||||||||| || || | |||| | | || | |
Sbjct 1839 GACAGTGGCAGACACAGGATCTTACAGTGCCCAAATAACCACAGAGATCTCTGTAACACT 1780
Query 2177 TTCCAGCTACACGCTGAGGATCTTC 2201
| |||| ||||| ||||||||||||
Sbjct 1779 TGCCAGTTACACTCTGAGGATCTTC 1755
>seq226115
Length=335
Score = 158 bits (174), Expect = 1e-33
Identities = 170/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 1977 ATCACCTGGCACTACAACGGCACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGC 2036
||||| |||| | ||| || || || | ||||| || | ||||| || || | ||
Sbjct 1 ATCACTTGGCTTTGCAATGGAACATCTCTTGCCTTCATAGAACCCTCTGAAACCGAAAGT 60
Query 2037 CCCCAGATCCACCTAACCAATCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTAC 2096
|| | |||||| | || |||| |||| | | |||||||| |||||||| |||||||||
Sbjct 61 CCAAAAATCCACGTGACTCATCCTAAACAGCGAAAGCGACTGAACTTCACCCAGTCCTAC 120
Query 2097 TCCCTACAACTGAGCAACCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCC 2156
||||| |||| |||||||| |||||||||||||| || || ||| |||||| ||| ||
Sbjct 121 TCCCTGAAACTCAGCAACCTGGAGATGGAAGACACAGGCTCTTACGGTGCCCAGATAACC 180
Query 2157 TCCGAGACCACAGTTAACGTTTCCAGCTACACGCTGAGGATCTTC 2201
| |||||| | || || | ||||| ||||| |||||||| |||
Sbjct 181 ACAGAGACCTCTGTAAAGCTGTCCAGTTACACTCTGAGGATATTC 225
>seq2943252
Length=1094
Score = 141 bits (156), Expect = 1e-28
Identities = 189/262 (72%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265
|| ||| |||||| || || | | |||||||| ||| ||| ||| ||| ||| ||||
Sbjct 649 AATTGAGGAACATACAAGTTACTAGTCACAGTCGACTATCTGGGAACAGGACCTGTGAGA 708
Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325
|||| |||||||| ||||| | |||||| ||||||| |||| |||| ||| ||| ||
Sbjct 709 TCCACCTGACCTGCTCTGTGGCGGATCCAGATGACAATGTCTCATTCAGGTGGCAGGTCT 768
Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385
|| || | ||||| | || || |||||||| | ||||||||||||| || ||
Sbjct 769 CAGGAAACATACTTCTGAGTGAACCAAACCTCACTATCTCCTGGGACCCCGAAAATTCCA 828
Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGC---TGTGAGCAATCTCTCTTTCACGG 2442
|||| || |||||||| || | | || ||| | | |||||| | || ||| | |
Sbjct 829 GTGAACAAAACTACACCTGTGTAGTTGAGAACCCCATCGGCAGCAATTTATCCTTCTCTG 888
Query 2443 TCTCGGCCCAGAAGCTGTGTGA 2464
|||| ||||||| ||| || ||
Sbjct 889 TCTCTGCCCAGAGGCTCTGCGA 910
>seq956339
Length=218
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 2043 ATCCACCTAACCAATCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTA 2102
||||| | |||||||| ||| ||| ||||||| | |||||| |||||||||||| |
Sbjct 190 ATCCATGTGACCAATCCAAAATGGGGAGAGCGACTGAGCTTCACCCAGTCCTACTCCTTG 131
Query 2103 CAACTGAGCAACCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAG 2162
|| || |||||||| ||||| |||||| || || ||||| |||| |||| || |||
Sbjct 130 CATCTCAGCAACCTGACGATGGCAGACACAGGATCTTACAGCGCCCAGATGACCATAGAG 71
Query 2163 ACCACAGTTAACGTTTCCAGCTACACGCTGAGGATCTT 2200
||| | | | ||||||||||||| |||| |||||
Sbjct 70 ACCTCTATAACACTTTCCAGCTACACTCTGAATATCTT 33
>seq1758104
Length=3047
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||| ||||||||||| || || | ||||
Sbjct 1065 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 1006
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || | || || || || | || || | |||||||||| ||
Sbjct 1005 GCCCACTTCTGGAAGGTTCTATTCCCTGCAGGCCTGGTCTCCACAAGCTCTGTATCCTGG 946
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || ||||| | ||| || | |||| || || || || || ||||
Sbjct 945 GTCTGGTCCTCCCCATCTCGCTGCCAAGTCAGCGTTATCTCCGCAGGGTAGAAGCCCAGG 886
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 885 GCCCAGCACC 876
>seq1869699
Length=957
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255
||||||||||| ||| ||||||||||| || || | ||| |||| || || || ||
Sbjct 7 CATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCCGCCCACTTCTGGAAGGTT 66
Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315
||||| || || || | || || | ||||||| || ||| |||| || ||||| ||
Sbjct 67 CCATCCCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGAGTTTGGTCCTCTCCATCC 126
Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367
| | ||| || | | | || || || || || || |||| ||||||||||
Sbjct 127 CTTTCCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 178
>seq1873982
Length=1919
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236
||| ||||| || || | ||||||||||| ||| ||||||||||| || || | |||
Sbjct 1075 GCCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGC 1134
Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296
| |||| || || || || || || || || || | || || | ||||||| || ||
Sbjct 1135 TGCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTG 1194
Query 14297 ACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAA 14356
| || || || || || || | ||| || | | | || || || || || || ||||
Sbjct 1195 GGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAG 1254
Query 14357 AGCCCAGCACC 14367
||||||||||
Sbjct 1255 GGCCCAGCACC 1265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603865625617800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |