Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 187 3e-42
seq1615235 116 4e-21
seq1700391 102 9e-17
seq1769580 86.0 7e-12
>seq1557410
Length=8730
Score = 187 bits (206), Expect = 3e-42
Identities = 320/465 (69%), Gaps = 7/465 (2%)
Strand=Plus/Plus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | || ||||| |||||| ||||||| |||||||| || | | |||||
Sbjct 6819 TTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATA 6878
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| |
Sbjct 6879 GGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAA 6938
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
||||||||||| || ||||| ||||| ||||| ||||||| | || ||| | || |
Sbjct 6939 ACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGC 6998
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || |||||| |||||||| ||||| | | ||||| || ||
Sbjct 6999 CTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGT 7058
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||||| || || |||||||| | |||||| | |||| | || ||||| ||||| |
Sbjct 7059 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAA 7118
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
| ||||||||| | ||| || || |||| | || || || || ||||| |||||
Sbjct 7119 AAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTA 7178
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
||||| ||||| || | ||| | | ||||| ||||| ||| | |
Sbjct 7179 GGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCT 7231
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 37627
||||| |||||||||||||| |||||| ||| ||||||||
Sbjct 7232 GTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCT 7276
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||| ||| || |||| |||| || || || || ||||||||||
Sbjct 6527 CATCACTCCCATCCTCTGACATTTGCCTACTC-TCTTCTCAAAGAAGTTGGTCTTTCCTT 6585
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 6586 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6619
>seq1615235
Length=3244
Score = 116 bits (128), Expect = 4e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992
Query 37320 ACAAGACGT 37328
|||| ||||
Sbjct 2991 ACAACACGT 2983
>seq1700391
Length=5054
Score = 102 bits (112), Expect = 9e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
||||||| || || || | |||||| ||||| || | ||| ||||| | |||||| || |
Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356
Query 37318 CTAC 37321
| ||
Sbjct 3357 CGAC 3360
>seq1769580
Length=2278
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | |||||||| || |||| |||| || || || || ||||| ||||
Sbjct 1426 CATCACTCCCATCCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 1368
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 1367 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568392347032200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |