Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1557410 187 3e-42 seq1615235 116 4e-21 seq1700391 102 9e-17 seq1769580 86.0 7e-12 >seq1557410 Length=8730 Score = 187 bits (206), Expect = 3e-42 Identities = 320/465 (69%), Gaps = 7/465 (2%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| |||||| ||||||| |||||||| || | | ||||| Sbjct 6819 TTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATA 6878 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| | Sbjct 6879 GGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAA 6938 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| ||||| ||||| ||||||| | || ||| | || | Sbjct 6939 ACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGC 6998 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| |||||||| ||||| | | ||||| || || Sbjct 6999 CTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGT 7058 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || |||||||| | |||||| | |||| | || ||||| ||||| | Sbjct 7059 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAA 7118 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||| | ||| || || |||| | || || || || ||||| ||||| Sbjct 7119 AAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACAGTA 7178 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| ||||| || | ||| | | ||||| ||||| ||| | | Sbjct 7179 GGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCT 7231 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 37627 ||||| |||||||||||||| |||||| ||| |||||||| Sbjct 7232 GTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCT 7276 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||| ||| || |||| |||| || || || || |||||||||| Sbjct 6527 CATCACTCCCATCCTCTGACATTTGCCTACTC-TCTTCTCAAAGAAGTTGGTCTTTCCTT 6585 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 6586 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6619 >seq1615235 Length=3244 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 2992 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 2991 ACAACACGT 2983 >seq1700391 Length=5054 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||| || || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356 Query 37318 CTAC 37321 | || Sbjct 3357 CGAC 3360 >seq1769580 Length=2278 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||||||| || |||| |||| || || || || ||||| |||| Sbjct 1426 CATCACTCCCATCCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 1368 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 1367 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568392347032200