Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq394582 379 2e-100 seq1611918 244 8e-60 seq1921304 150 1e-31 seq1537755 131 1e-25 seq2840725 105 5e-18 seq365164 91.5 1e-13 seq1718482 87.8 1e-12 >seq394582 Length=1925 Score = 379 bits (420), Expect = 2e-100 Identities = 566/796 (71%), Gaps = 8/796 (1%) Strand=Plus/Plus Query 29661 TGCAATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 29720 ||| ||| ||| |||||| |||||| || | |||||||| | ||||||||| Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616 Query 29721 CTTAAAGTCGTCCAGGTTCTCC--ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 29778 |||||||| || | | | | || |||| || | |||||||| |||||||| Sbjct 617 TTTAAAGTCATCAA--TACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTT 674 Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 || ||||| | |||| | || | || || | ||| | || || | ||| || ||| Sbjct 675 GGGGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCT 734 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 || || || || ||||| || ||||||| || | || | ||| || |||||||| || Sbjct 735 CCAAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTC 794 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || || || || || | ||||| || ||||| || |||||||||||||| ||||| Sbjct 795 AGCAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGA 854 Query 29959 TAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018 || |||||||| || | |||||| | ||| ||||| || | |||||| || ||| Sbjct 855 TAAAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGA 914 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || || ||||| ||| | ||| ||||| |||||||| |||| ||||| | |||||| Sbjct 915 GGCAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC- 973 Query 30079 TCTGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 ||||| || || ||||| ||| | | ||||| || || || | ||| || || Sbjct 974 ACTGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGA 1033 Query 30138 GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 || |||| ||||||| |||| |||||||| || ||||||||||| || || || | Sbjct 1034 ATAATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGAT 1093 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 ||||||||||| ||||| || || ||| || ||||| ||||||||||| || Sbjct 1094 AGGTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGA 1153 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 1154 GCCATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCC 1213 Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | || ||||| || || ||||||| || || ||||||||| ||||| || |||| Sbjct 1214 CCGAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAA 1273 Query 30378 GAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCC 30437 | || || ||||| | ||| |||| || ||| || ||||| || || ||| | | Sbjct 1274 CAAAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGC 1332 Query 30438 CG-TGCCCGTCCTGTC 30452 || ||| || ||||| Sbjct 1333 CGACGCCTGTTCTGTC 1348 >seq1611918 Length=7152 Score = 244 bits (270), Expect = 8e-60 Identities = 429/623 (69%), Gaps = 24/623 (4%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 || || ||||| || || | || |||||| |||||| || || | ||||| | ||| Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 | || || ||||||| || || ||||| || || || | ||| || |||| |||||| Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 || | |||||||| |||||| || || | || || |||||||| Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551 Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006 || ||| |||||| ||||| || || ||||| |||| ||| || ||||| || | | Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492 Query 30007 GTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063 | ||||| | ||| || ||||| |||| ||| ||| | || ||||| || |||| | Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGG---AAGATCTGTTGGATTCCAAGCACACATG 3435 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || | |||| | ||||| || | | ||||| || || || Sbjct 3434 ATGATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCA 3375 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || || || || |||| ||| || |||| ||||| || |||||||||||| Sbjct 3374 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCAC 3315 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 ||||| | | || || |||| ||| || ||| | ||| ||| ||| ||| Sbjct 3314 TGGAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCC 3255 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 | |||||||| ||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 3254 AGAAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 3195 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 | |||||||| || |||| ||||||||| |||||||| || ||||||| || || Sbjct 3194 GCATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 3135 Query 30364 CTCTTGGTCGTGAGGAGGGGAAA 30386 | ||||| || || || ||||| Sbjct 3134 CATTTGGTTGTCAGCAGAGGAAA 3112 >seq1921304 Length=364 Score = 150 bits (166), Expect = 1e-31 Identities = 203/280 (73%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||| ||| || |||||||||||||| || | |||||||||||||| || || Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || | || |||||||| |||||| |||||| ||||| || || ||||| || | | Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTG 30045 ||||| ||||| || | || |||||||| || ||||| ||| ||| ||||| Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTTT 179 Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 || ||||| || |||| |||||| | ||||| || |||||| | ||||| || | Sbjct 178 GGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATC 119 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | |||||||| || || || || ||||| || |||| Sbjct 118 ACTTTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79 >seq1537755 Length=8267 Score = 131 bits (144), Expect = 1e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || |||||||| || |||| |||||| ||||| || || ||||| |||| Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||| || ||||| || | || ||||||||||| || ||||| || Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756 >seq2840725 Length=252 Score = 105 bits (116), Expect = 5e-18 Identities = 177/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 112093 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 112152 || || || || || || |||||||| |||| || || || | | | ||||| |||| Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193 Query 112153 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 || || | ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133 Query 112213 ACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGG 112271 |||||||| || | |||| | ||| | || | | || || || | || || Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCCTGAG------CGG 80 Query 112272 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACC 112331 |||| ||||| || || || || ||||||||||||| | | |||| || ||||| | Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20 Query 112332 GTTCAG--AATGA 112342 ||| || ||||| Sbjct 19 GTTTAGCAAATGA 7 >seq365164 Length=4430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| ||| Sbjct 3739 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTC 3680 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 3679 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCTTC 3620 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || || ||||| | |||||||| || Sbjct 3619 CCAGATTTTCACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 3572 >seq1718482 Length=5084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || ||||| || || ||||| | | ||||| |||||| || || Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392525613854765