Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq394582 379 2e-100
seq1611918 244 8e-60
seq1921304 150 1e-31
seq1537755 131 1e-25
seq2840725 105 5e-18
seq365164 91.5 1e-13
seq1718482 87.8 1e-12
>seq394582
Length=1925
Score = 379 bits (420), Expect = 2e-100
Identities = 566/796 (71%), Gaps = 8/796 (1%)
Strand=Plus/Plus
Query 29661 TGCAATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGC 29720
||| ||| ||| |||||| |||||| || | |||||||| | |||||||||
Sbjct 557 TGCCATCTCCATTTTTATGGTGGGATGTGGATTATAACCCTCTAAACTGAAATCCTCCCT 616
Query 29721 CTTAAAGTCGTCCAGGTTCTCC--ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 29778
|||||||| || | | | | || |||| || | |||||||| ||||||||
Sbjct 617 TTTAAAGTCATCAA--TACAGCTAACTTTCCTCAGAATGGTTAGTGTGGGGAAGGGTCTT 674
Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838
|| ||||| | |||| | || | || || | ||| | || || | ||| || |||
Sbjct 675 GGGGTCCTCTGTAACTGAATTTTTATAGGCTCTATGTGGTTGAGATAAATGTGTGCATCT 734
Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898
|| || || || ||||| || ||||||| || | || | ||| || |||||||| ||
Sbjct 735 CCAAGTGTATGCACAAAATCACCCGGTTTTAAGTCTGTTAGGTGTGCAATCATGTAAGTC 794
Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958
|| || || || || || | ||||| || ||||| || |||||||||||||| |||||
Sbjct 795 AGCAGTGAATAACTAGCCACATTAAATGGAACCCCCAGGCCCATGTCCCCCGATCTCTGA 854
Query 29959 TAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018
|| |||||||| || | |||||| | ||| ||||| || | |||||| || |||
Sbjct 855 TAAAGCTGACATGACAACTCTCCATTAGCCACATAAAATTGGGCTAGGGTGTGACAGGGA 914
Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078
|| || ||||| ||| | ||| ||||| |||||||| |||| ||||| | ||||||
Sbjct 915 GGCAGGGCCATCAGGGAAAGGTCCTTGGGATTCCAGGCACACAATATGATTCTCCTGTC- 973
Query 30079 TCTGGG-TTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137
||||| || || ||||| ||| | | ||||| || || || | ||| || ||
Sbjct 974 ACTGGGATTCTTTCTGATCGTGTCAATCACATTTTGTAGTTGGTCAATCCCTTGTCCAGA 1033
Query 30138 GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197
|| |||| ||||||| |||| |||||||| || ||||||||||| || || || |
Sbjct 1034 ATAATCTGAGTTCATGTCTCTGTAGTCTGCTCCAAAGTGCCTCCACTGAAAGCCATAGAT 1093
Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257
||||||||||| ||||| || || ||| || ||||| ||||||||||| ||
Sbjct 1094 AGGTCCCAGGTCACCCTCGGTTCTATGAGTGAAACCGTGTTTGTCTAAAAAGTCTCTAGA 1153
Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|| |||||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 1154 GCCATTGGCGTCCCAGATGTTTACCCCCTTTGATGAAAGCTCTTTGGAGTTTGTTGACCC 1213
Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377
| || ||||| || || ||||||| || || ||||||||| ||||| || ||||
Sbjct 1214 CCGAACAAACCATAGAAGTTCCTCCAGAACACCCCGCCAAAAGACTCTCTTAGTTGTGAA 1273
Query 30378 GAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCC 30437
| || || ||||| | ||| |||| || ||| || ||||| || || ||| | |
Sbjct 1274 CAAAGGGAATTGTCCTCTTAGGGAGTACCTGCTCTGTGAGCCAAAGACAGA-GAGAGTGC 1332
Query 30438 CG-TGCCCGTCCTGTC 30452
|| ||| || |||||
Sbjct 1333 CGACGCCTGTTCTGTC 1348
>seq1611918
Length=7152
Score = 244 bits (270), Expect = 8e-60
Identities = 429/623 (69%), Gaps = 24/623 (4%)
Strand=Plus/Minus
Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826
|| || ||||| || || | || |||||| |||||| || || | ||||| | |||
Sbjct 3713 GGGAATGGTCTTGGTTCTCGCTA-AGCTGAACCTTCAGTGGCTCAATGTGATTCTAGTAA 3655
Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886
| || || ||||||| || || ||||| || || || | ||| || |||| ||||||
Sbjct 3654 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTTAGACCAGTGATGTGAGC- 3596
Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946
|| | |||||||| |||||| || || | || || ||||||||
Sbjct 3595 ---------------AGGGCGTAGCTGGTGATGTTGAACGGCATGCCCAGGCCCATGTCT 3551
Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006
|| ||| |||||| ||||| || || ||||| |||| ||| || ||||| || | |
Sbjct 3550 CCTGACG-CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCAGAGG 3492
Query 30007 GTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063
| ||||| | ||| || ||||| |||| ||| ||| | || ||||| || |||| |
Sbjct 3491 GCATGGCATGAAGGCAGTGCCATCAGAGG---AAGATCTGTTGGATTCCAAGCACACATG 3435
Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123
||||| | ||||| || | |||| | ||||| || | | ||||| || || ||
Sbjct 3434 ATGATTCTTCTGTCGTCAGAGTTGGTTTTGATGGCATCAATCACTTTTTGTAGTTGGTCA 3375
Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183
|| || || || || |||| ||| || |||| ||||| || ||||||||||||
Sbjct 3374 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCTGCCCCAAAATGCCTCCAC 3315
Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243
||||| | | || || |||| ||| || ||| | ||| ||| ||| |||
Sbjct 3314 TGGAAGTCAAAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCC 3255
Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303
| |||||||| ||| |||||||| |||||||| || || ||||| || || |||||
Sbjct 3254 AGAAAGTCTCGGGACCCGTTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 3195
Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363
| |||||||| || |||| ||||||||| |||||||| || ||||||| || ||
Sbjct 3194 GCATTTGTGGATCCCTTGACAGACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACA 3135
Query 30364 CTCTTGGTCGTGAGGAGGGGAAA 30386
| ||||| || || || |||||
Sbjct 3134 CATTTGGTTGTCAGCAGAGGAAA 3112
>seq1921304
Length=364
Score = 150 bits (166), Expect = 1e-31
Identities = 203/280 (73%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| ||||||| ||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 355 AGACCGGTGATGTGTGCGATCATGTACGTGAGCAGGGCCTAGCTGGCGATGTTGAACGGC 296
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| | || |||||||| |||||| |||||| ||||| || || ||||| || | |
Sbjct 295 ACGCTCAGGCCCATGTCTCCCGACAGCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 236
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTG 30045
||||| ||||| || | || |||||||| || ||||| ||| ||| |||||
Sbjct 235 ACGTAGAACTGGCAGGGCGCATGACACGGAGGCAGCGCCATCAAAGG---AAGATCTTTT 179
Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105
|| ||||| || |||| |||||| | ||||| || |||||| | ||||| || |
Sbjct 178 GGATTCCAAGCACACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATC 119
Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145
| |||||||| || || || || ||||| || ||||
Sbjct 118 ACTTTTTGCAGTTGGTCAACTCCTTGACCCGAATAATCTG 79
>seq1537755
Length=8267
Score = 131 bits (144), Expect = 1e-25
Identities = 128/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927
||| || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||
Sbjct 5592 TAGACCAGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 5651
Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987
|| || || |||||||| || |||| |||||| ||||| || || ||||| ||||
Sbjct 5652 CACGCCCAGGCCCATGTCTCCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 5711
Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||| || ||||| || | || ||||||||||| || ||||| ||
Sbjct 5712 CACATAGAACTGGCAGAGGGCATGGCACGGAGGCAGCGCCATCAG 5756
>seq2840725
Length=252
Score = 105 bits (116), Expect = 5e-18
Identities = 177/253 (70%), Gaps = 10/253 (4%)
Strand=Plus/Minus
Query 112093 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 112152
|| || || || || || |||||||| |||| || || || | | | ||||| ||||
Sbjct 252 GGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCAATTC 193
Query 112153 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212
|| || | ||||||||||||||||| ||||||| ||||||| ||||| || |||
Sbjct 192 TTCTCAAGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCTTCT 133
Query 112213 ACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGG 112271
|||||||| || | |||| | ||| | || | | || || || | || ||
Sbjct 132 ACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCCTGAG------CGG 80
Query 112272 ATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACC 112331
|||| ||||| || || || || ||||||||||||| | | |||| || ||||| |
Sbjct 79 CGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCA 20
Query 112332 GTTCAG--AATGA 112342
||| || |||||
Sbjct 19 GTTTAGCAAATGA 7
>seq365164
Length=4430
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||||||||| ||||| || || || || |||| |||
Sbjct 3739 CATATCTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTC 3680
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||| | ||| ||| ||| |||| |||||||| ||| || ||||| ||
Sbjct 3679 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCTTC 3620
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || || ||||| | |||||||| ||
Sbjct 3619 CCAGATTTTCACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 3572
>seq1718482
Length=5084
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || || || ||||| || || ||||| | | ||||| |||||| || ||
Sbjct 1113 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 1054
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 1053 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 1006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 392525613854765
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