Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1557410 96.9 6e-15 seq1725941 91.5 3e-13 >seq1557410 Length=8730 Score = 96.9 bits (106), Expect = 6e-15 Identities = 233/352 (66%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 48024 GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA 48083 |||| |||| ||||||||||||| |||||| || || | | | || | || | Sbjct 6728 GCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTA 6787 Query 48084 CGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCC 48143 | | |||| | ||||||| |||||| ||| | | || |||||||||||| | Sbjct 6788 CTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCAC 6844 Query 48144 TGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCC 48203 | || || || || | ||| | || | | ||| || ||| |||||||| | | Sbjct 6845 AACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTC 6904 Query 48204 CCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTG 48263 | | | || |||||||| || | || ||| | ||||| ||||||||||| ||||||| Sbjct 6905 CTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTG 6964 Query 48264 CCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCG 48323 | || || || | |||||| | | ||| | ||||| ||||| | | | Sbjct 6965 CGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGG 7024 Query 48324 CCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||| || |||||| ||| || || |||||||| || ||||| |||||| Sbjct 7025 TCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAG 7076 >seq1725941 Length=6718 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 || || |||||||||||||||||| |||||| ||||||||||| ||| ||| || || Sbjct 1666 ATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG-TTGCTCTTCCG 1724 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | || ||||| |||||||||||||| |||| || |||||| ||| ||| Sbjct 1725 ATTACAGGAATCTTTGTAGAGCATGTATGGGGTTCCTGTCTCTGTCTGAGAC 1776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893906967571200